HsaINT0188393 @ hg19
Intron Retention
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148975490-148982085:+
Coord C1 exon
chr7:148975490-148975618
Coord A exon
chr7:148975619-148978595
Coord C2 exon
chr7:148978596-148982085
Length
2977 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACATAGACTCCTTTGCCAGGTG
3' ss Score
4.07
Exon sequences
Seq C1 exon
GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG
Seq A exon
GTGAGTGAGGACAGTGAGGCGGCAGGATGAACAGTGTCCCGAGGCAGCACGCGATCACCAAGCGATGGTGCTGAGGAAAAGCCCTGGAAGCATGGGGCTGGGAGAGAGGGCTGGGAGACTGGTTGGGCTGGGCCGGACAGGCTTTCTGGGAAAGAGGCCCCTGAGACAGGCCTAAAAGAAGGTAGGTTTTGGCATTTTCAGCGTGAGAAAACAGTCTGTATAGAGGGGTGGGTTCCTCTGCGTGTTGGGGGCCTGGGCACATGGGTCCGGTGGAGTGAGGGGAGGGGGTAGATGGGTGTGTTGTGCCTGCCCAGGGTCTTTACGAGGGTCCCATCCACGGGGCAGTGTGTGTCCTGTGCCTAGCGCGGCGCCAGCATGGTGTTTCTCAGTAAACGCCCTCTTTCTGAAGACCTACTGGGAACTCTGGCTTTAGTCATCCTTCCAGACTTCTTTGTCTGCTTTTATTTAAAGGCAGTCCCTGCCTGTCCTTTCACAAAAGTGTATATCAGGGCATTTAGCGGAACACTTGCAAACAGTCCAGAGCTCTGTTCTCTGTCTAGTGTTCCTCTGCGGGGCTGGCTCCTCCACCTGGTCCTGCCGCTGGCCCGACTTTCAGTCTCTGGTTGCTTTCCCTGTGGTGATTTCTGGGTATCTTCCCCACTGGATCATCCTCCCTTCCCTGGGTTTCTCTTTCCAGCCAGTGTGTAAGTCTGGGCTCTGCTCATGGAGTTGGAGAGATGGGACCCTCTTAGGTGGGAAGGCAATGTTCCTGCCCCATTGCAGACCTGGAACGGTGTCCGGGAGCCTCCCAACCCTCTGTTCTTTTCAGGCTCATCAGGGTGACAGATGCTGAGGGACAAGTCATTAGCACTGGCCTGCAGGAGTGTTGGGGACATGGCCTTCGTAGCTCTTGTCTCACCTCTGAAGCCCTCGGGACAGAAGCCCTAGGCCTCCTTTCCCTGACAGGGACTTGCGCACGTCCAGGGCTGCTGGGGAGATGGCTGTGCACGCTGCAAGCCGCGGGTGTCCAGCAGCCGGTGTTGGGAGAGGCCCTCGCCGAGTCTTTCTCACGTGGCCGCCAGCTAGCACCAGCATTTTATCTTTGTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTATTGATCATTCTTGGGTGTTTCTCGCAGAGGGGGATTTGGCAGGGTCATAGGACAATAGTGGAGGGAAGTGGGGAAGTGGACACAGCACATGTTTCAGAGAGCACAGGGTTGGGGGTAAGGTCACCGATCAACAGGAACCCAAGGCAGAAGAATTTATCTTAGTACAGAACAAAATGAAAAGTCTCCCATGTCTACTTCTTTCTACACAGACACGGCAACCATCCGATTTCTCAATCTTTTCCCCACCTTTCCCCCCTTTCTATTCCACAAAACCGCCATTGTCATCCCGGCCCGTTCTCAATGAGCTGTTGGGTACACCTCCCAGACGAGATGGTGGCTGGGCAGAGGGGCTCCTCACTTCCTAGTAGGGGTGGCCGGGCAGAGGCGCCCCTCACCTCCCGGACGGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACAGGGCGGCTGGCCGGGCGGGGGGCTGACCCCCCCACCTCCCTCCCGGACGGGGCGGCTGGCCGGGCAGAGGAGCTCCTCACTTCCCAGTAGGGGTGGCCGGGCAGAGGCGCCCCTCACCTCCCGGAGCACCAGCATTTTATCTTTGATTAAGCCAGAAGGAGAGTCTTTAGATGGGGAGTCTCCAACCTTCCCCACCAGGGACATCCTGCCAGGCATGGGGCCTGGGGAAGAAGGGCGGAGGCACCTGTGGCCGCAGCAGAGCCCCACAGGAGTGTGGGGGCCTTTTGGGAGTGGGGTGGGGTTGGGGTTGGGTGGTGGGACCTGGTGAGGGGCTTCCTCCTGAGGGTTCTCTCCCTCCCTCTCCAGCTTCTATCTCCCTGGGGACTGTGGGGACCCAGATCAGTCTGGGGTCCTTCCTGGTCTTTCCCCATCGTGGTCTGGTCTGGCCTGGCTGGAAAGGCACTGCATGAAAACCCAGGCATCAGATCCCAGGCATGTGGTCCGATGATGATGGAAAAGCTGTTCACGTGGTCTTGGCGTGGCTGGGCTCCCAGCCCCTCCGTGTCCACAGTCTGTGTCCCTCTGCCTAGAGTCTGTGCTTCCCTGAGAGGGCAGGGTGCCAGGACCCTCCCTCACATTAGGGACCCCTGAGAGCTGGGTGCTGAGACCTGGGGTCTCACGTCTCCAGCACATTGCTGTGATCACCTGCCACTGCCTTGGTTGTCCTTGTCACTGCTGTCCCAGCAGCTCCTTGCCTCCACCCAACCTGGGAGTTGAGTGAGACTCACACAGACCCAGGCAGGAATCTCAGGTCCCAGTGCCTCCTCTCTGTCACCAGTGAGTGTAGTGGCAGACAGGTCGTGGACGCTCTGTGTGGATTTGTCATGTGGATGAGCAGCTGAGCATGGGTGCAGCACTCACCACCTCTAGTCCACAGAGGCCTCTTAGGGTGGTCTGGGGGCATGCAGGGCCCCTGGGGTTCATTGTCTTTCACAGATGGTAACTAATGTCACCAGAACTCTTGGGGGTGGGGTCCTGCCACCCTCTCTGCTGTGCCCAGGGTCTCTGCTTCTGTGTCCCACTCCAGCTGACCCCTGACCTCTGGGCTCCCTGGCTCCTGGCCTTGCAGTTTGATCTCCCCTCCCCTGATGTCCTTAGCTTGGCCTCCAGGAATGAGGCAGATGACAACAATCAGGACTGAGTGACCGTGCAAGGCAGTGCCTGTGTGGCAGGGCTCAGTGAGCAGGACCCCTGCAATGTGCTGTGAGCACTGTGGGGAGATAGGGCCCGGGCTGAGGCTGGAAGCCAGGACTGGGCCGAGTGACCTGGGGGACAGGGTGGTGAGGTCCACTTGGAAACCAACATAGACTCCTTTGCCAG
Seq C2 exon
GTGGTGGTGTGGCCATCAAGACAGAGGCACAGTCTGAAGACGAGATGACGCCTGAGCGGCTCTTTCTGGGGGTGTCCCGAGGCCAGACCGAGTGTAGAATCCCCCGAGGGCCCAGGAACAGGCCTGGGGGCCCCAGCCGTCATCAGGCCCAGGGCATGCCCAGGGTGCGGGCAGGGGAGCCACGGCCACCGGGGGCCAGTGGGGAGACGCCCCGAGTCCTCTCCCGCAGGCGGCAGCGGGCATTCCCCTGCCCCGACTGCGGGCAGAGCTTCCGCCTGAAGATCAATCTGACGATTCATCAGCGGACCCATGTGGAGGAGGGGCGGCAGGAGGCCCCCGGCCGCTCGCCCACCAGCTGCGGGGACAGCCAGGCCATGCTGGAGCCGGGGGAGGTGGTGGTACCCGGCCCTGTCATCCGCTGGCTCCCCGAGGAGCCTGAGGGTCGCCGCTCCGTGGCAGGGGGCCGTGCCTTGGTGGGGCGGCGGCCTGCAGCCAGCAAGATGTACCACTGCAGCGAGTGCCTGCGCTTCTTCCAGCAGCGCAAGAGCCTGCTGCTGCACCAGCGCCTGCACACCGGCAATGGCCAGGGCTGGCCCGCCTGCCCCTACTGCGGCAAGGCCTTCCGCCGGCCCTCGGACCTCTTCCGGCACCAGCGCATCCACACCGGTGAGCGGCCCTACCAGTGCCCCCAGTGTGGCCGGACCTTCAACCGCAACCACCACCTGGCCGTGCACATGCAGACCCACGCCCGAGGCCAGGTGGGCCCACACTTCCCTGCCGCCCCCGCCCGCCACGGGAGCCTGCCCCTGCCCTGGCCCAGCCGGAAGGAGGAGGGCTGACCTGGCAGGAGCCCACAGAGGACCCCTGGCGGGGTCTCTCCCCTGTGCCTGACGCAGGTTCTTCCTTTTCCTGGGATGGAGAGAGGTTTGTTGTTTTTACCCATTCAAATGGGAAGCTAGCTGCCCTTCTGGTGACATTGTGTGTGACCGGGTGCTTTCTGTTTCCTGTTTGCACTCTTCGCTGCCTTTTCTGCATTCCTGACTTCTAAAAGATGCCTTAAGGCTTAAGGGATGCCATATTTTTGATAAGGCCTCTGGTAGGTACCACAGCCAAGAGGACCAGAGATCATGGCCCTTCCAGTATGGGGGCGATAGAGACATCGGGGACCTGGGATTTTTGTTTTGTGCAGAGATCTCCTGCCTGCTGTCACCATGAGAAACAGTGGAGTGGAGTGGATGGATGGCCTGACTTGAAGAAAGGGCCCTGGAAAGTTTTCTACTTTGCTATTTTGAAATTTTTTTCCCTTCTTATAGAGACTTTGAAATACTTTTGTAAATGTGTGTAGTTGTTAATGGAACTTTGCCTTTTGCAAAGTCGGAAAGAGTCGGCTTTTCCATGTGAGGCTCGCAGAGCTGAAAGGGGAGCTACGTCCACCAGCCTGTGGGTCTTTTGGTTTTTTTTTTGTTGTTGTTGTTGTTTTTTTAAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTACAATCTCCGCTCACTGCAACCTCCGCCTCTCGGGTTCAGGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCACTCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTGTCCAGACTGGTCTCGAACTCCTGATGTTAGGTGACCCGCACACCTCGGCCTCCTGAAGTGCTGGGATTACAGGCGTGAGCCACCACTCTTGGCCCAGCCTGTGGGTTTTGATGGGGATGTCTTGGCTGCTGTCTTGGAGGCACAGTGTCTCCCCATGTGTGTGTTTCTTGGCCCAGAGTGACTCCCAGTATTCCTAGTCCTTCCCCACAGGATAGTCACATCCATTATTTACTTTTGTTGTCAGCTGGGAGGGGAAACTGAAGCCTGGACACGTCTCCCCAAGGGCTCAGTGTTCATGGGTGTGTAAGATCCATTGACTGGACCCCAGAAAGCACCCTGAGGGGCAGTGCAGAGAGAGCCCAGGAAGCCCCTCCACTAGAGGAGGCCCTTGGTCTGGCTGAGGACCACGTCCACCCTGGGCCTCCAGGCCTGCTTTTCACATTAAAGGCGGGGCAGTCTCCTCTCAAAGGAGTTCTCCCTTGAGCACTTTGGGCTCTGGGGCAGAGTTGGGCTAGGAGATCTGGGTGAATCCTTTAGTCACAGCTAGTCTCATGTTCCTCTTCTGTCAAAGGGGTCATGGCCCCAGTGTGTCCTACCTCAGAGTTGTCAGGGTCAAAGTAACAGGCACTGGGACAAATATGAAGCCTAGCTTTGTGCTTCCTTTCAAATTCAGGGCCTCCTTTCTACTCCATTCCAGCCTTTTTTTCCTGTCAGAATCCCTCAGGAAGGACCTTTATCTTCTGGAGTGAGTGGCAGTTCCACTGGGTTCAGTGAAAGAGTCGCCCATGGGGCTCTGTTCCCCAGGAGTCCTTTGTATTTTGGTGAACAAATTCTTACCAAAGCATGAGATTCGGACTGTAGAAGTTCAGACTGCCTCAGTTCAGACTGCCTCATGGGGCAGTCTGGAGGTCAGCTGGCTTCTGGTGTCTCTCATCACACCACTGCGGACGCTGTCTGTAGAGCAGCCTTGGTGTGGGTGACTCTGAAGCTGGAGTGATGGGACCCCAGCTATCCTTGTTTTTTACCGCCTTGTCTGGCACTGTGACCACGCTTCAGGGCTGCTTCTGGGGGTCTTGGTCCCTGGATGTGCCATTTCCTTGCCCTTCTGACCCTCACACTTCTTCCAAAGTCTTGAGCAGAGTTGGGGGCCAATGGTAGCATTGCTGTCATCTCTGGGAGGAGAGTGAGTATACAAGTCAGTGACAGTTCAGCCAGGCTCCCTTGGGTTTGGGAAGAGGCACTGCCCTTCTGTGCTGTGGATCCTGCTTGTCTGCTCTGGAGTCCCCCCACCCTTGCCAGGAGCTTCACAAACCAGAGACGGGCTGTCAGCAAGAGCTCAGACAGGATGTGGTGCAAGTGCAGGTGCACGAGTTTAACCCTCAGCTGCAGGAGCTAGTCTCAGGTGTTCTGGGGATGCCTCAGGCTAAGAATTTTGCCGACTTTCTGGGCTTGGTTGGCTAATGCCAAATGCCCCTGCTTAAATATCACAAGGTGCTGATTCTCCTTTTTTCTTTTTTTCATACCAATGTGCTCAAACTTTGAGCTAGGTCTTGTGAGTTTGCCTAGCACTCAGACCTGTTTAAGTAACGTTCTTTACATTGAAACAAGTCAACCGAAGCTTTGTGGTGCAGGAGCTGAGGGTGCCCCAGACTCAGTGGGAGCCCTGGTTGGGCCCCAAACTCTCCCAGCAGGGTCCTCGGTTTCCTCATTTGTGAAATAAATGAGTGGGCCACGACGTTAATAAGCCCAAGAGAACTGTGAAGGTGGTAGTCCCTTGCCCTAATTGGTGCTCAATAAAGTTGTTGGCATAAACGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-ZNF783:NM_001195220:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.645
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=10.0),PF156161=TerY-C=WD(100=32.5),PF127732=DZR=WD(100=21.1),PF134651=zf-H2C2_2=WD(100=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)