GgaINT1002552 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BVL4]
Coordinates
chr2:498988-501312:-
Coord C1 exon
chr2:501178-501312
Coord A exon
chr2:500662-501177
Coord C2 exon
chr2:498988-500661
Length
516 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GGGTCCTGCCCAATTTCCAGCAG
3' ss Score
3.6
Exon sequences
Seq C1 exon
CACACGTTCCTCAGGAAGCCATAGGTGCTCCAGCAGACCTCAGCCACCCAGCTGCCTCCCGTCCCTGCCCCATCCCCACGTGCTGCCAGGAAGTGCTGACCCTGAGCCTGCCTCCGTCTCCTCCCCCTGCAGCAG
Seq A exon
GTATGGGGCAGAGCCCTTCCTCCCTCCTGCCGGGCTGGGGGCTCAGGGAGCGTAGCATGCACAGAGAGCAGCGGTTGCTCTGCATGGAGCTTTCCTGAGGCTTTTTGAATGGATTTCTACATGATTTACATGGGCCAAGAAGGGCTTAGTGCAGTAAATCCAGTTACCAGCTTTGAAACTATATAAAAATGGGGTATGGCATAGTGTGAACCAAGTCACTCGGTTGGTTTGCACTGAAGGACGAGTCCTTGATGTATCTTTTGGACTCCTCCCATCCTCAGTGATGTTTGTCATCCCTTGGGGTGTCTGAGGTGGTGGGCTGCAGTGGTGCACTGCCGGTGCCCTGCTGTGCTCTGGGTACGAAGGCACTGGGCTGGAAGAAGAGAGCGGTGCTGGCATTGGTGGCAGCTCCTAGGCGAGGAGAGGGGGAGGCACGGGGAAGAGCCCCCTGGGTCTTTATGCCTTGTCCTCAGAACCGAGCGGAAGAGTGATGCTGGGGTCCTGCCCAATTTCCAG
Seq C2 exon
CAGGTGCCGACGTGGGGATCCCAGGAGAGGTCCTGCAGGAGGGGATCGGCGCCGAGGAGGGTCTGCAAAAGGAGGACGTGGGAGGTGCAGGGAACCGTGGCCAGTATCCAGCAGCAGATGCTCCTGCAGAGCCGAGCAGGGAGGAGATGCCAGACCTTTGCCAAACAGCAGCACGTGTGGAGCCCGGCGGCTCGGCTGGCCTGCTGGGAAAGCCAGAGGAGAGCGTGGGCAGAACTGCTGCCTGCCAGCGAAACTCCTCCCGGGAGAAGTTCTACAGGTGCATGGTGTGCGGGAAGAACTTCCTGCTCAAGATCAACCTCATCATCCACCAGAAGAGCCACAGCAACTGGGTGCCCTACGTCTGCATCGAGTGCGACCAGGCCTTCACGTCCAAGAAGAAGATCAGGTGCCACCTGCGGATCCGGGCGGCCACGGGGTTCTGCCCACCCTCCGGCACCGAGGGGGGCTCCAGCCTGGCGCCCTGCAGGGCTGCTCAGCCCCACGGCCGGGGCAGCAGCACCAGGGAGCAGTGGGAGAGGCCCAACCCCAACCTGTTCCCGCCGCCTCCTCAGAAGATCACGTATACCTGCATGGAGTGCATGGAGAACTTCTCCAGCCAGAGCTTTCTGGTGCTGCACCAGAGGACGCACGCTAACCGCCATCACTTCACCCTGTGTCTGTGCTGCAATAGGAGCTTTGTCTGGGCCTCCCAGTTCGTCCGCCAGAGCGCCGCGGGCAGGAAGGGCTACTGGTGCAGTGAGTGCCAGAAAGCCTGCAAGCGGCTCCGCCGCCCGCGTGGGCACCGGAAGACCGACGTGAGAAGGGGGAGCCCACACGAGTGCAGCAGCAAACTGCCTCTGCACGTTGAGCCCGTGTAGGTGAGGAGGGCGAGGGGTCGCCTCTGGGAATGGGGCCGCTGCCGGCCCTTCTCCTCTCTCCATCCTCGGCTGTGGGCTCTGGGTGCTGTGGTTGGAGCTCATCCCACCCTGCCTGGCATCCATGGCTGCGTGCTGCTGGGGCCTTAGGGCGGGAGGAGCGGCTGCGAGGAGCTGGTTTGGGGCTCTGTGGGAGTCAGGGTGCTCCCCACAGCTCCGCTGTGCTGCTGCTGGGAAACCTCCGGCTTTGTTACCTTTCTGAGGACACCCTGCAGCGCATCCGTGTCCCATCACAGCGTCCCATATCTGTGCCCTTCCCGGAGCTCCTCTGCTGGGCCGGGTGCTGCTGCTGGCCTGGGGGCTCCCCCTGCCTGGATGCCACCTTGGGGCCATTTTAGAGCTGTGAGGGGGAAGAATTTGGGGGTAAAGCAGTGGAAGTGGAGGGAGCGCTCCGTGCCGGGTGGGCACTGCTGGTGGGCAGTGGGGGCGCGAGGGTGGGTTGTGATGGTAAATGGTGTGTGTTGGAACATAACATGCGGAGGGGGCCGTGCCGCGGGGCAGGCCGGTTAATTGGTTAATTAAAGCAGTCCTGGGAATGCAGTGGGTCTGTGAATGTTTGTGGGGCTTTTAGGGACTGAGAGGTGTGGAGATGTGGAGTGTGTGTGTGGGGGGGGGTCCGTGACTGAGGGAGCGGTTGGAAATGGGGGAGCTGGGAGTGTTGGGGGGGGGTTGGGGTTGGGGTGGGAGCTCCGGGGTCGGCAGAGCCGGGAACTGCGGGCTTCTGTGAACGGTTTGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.9),PF0009621=zf-C2H2=WD(100=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAAGTGCTGACCCTGAG
R:
GAAGTTCTTCCCGCACACCAT
Band lengths:
352-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]