MmuINT0179869 @ mm9
Intron Retention
Gene
ENSMUSG00000079573 | Zfp783
Description
NA
Coordinates
chr6:47898893-47899990:+
Coord C1 exon
chr6:47898893-47899018
Coord A exon
chr6:47899019-47899879
Coord C2 exon
chr6:47899880-47899990
Length
861 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CAGATTTTTCCCTCTCACAGGGA
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
Seq A exon
GTAAGTGAGAACAGCTGGACAGCAGCAACAAGCCAGATGTTGAACTGTGCGGAGTAGGCTCTTGGGAGCTGAACCTTGAACAGGTAGGTTTAGTCTTTTCAGTGCTCAGATGTCTGAATAGCACTGTGGGGGCCTGGACACACCCATCTGCCTGGAGTAAGGGGAAGAGTGTGAATGAGCTTTCTACCGTGGCCATGTCTCTGTCTCACCTCCCAGTGTGGCACTAGGTTGGCACACTATAGTTTCTCAGGATTCTTTCTGAAAACTTGAGAACTCTGACTTTTCTCTTTCATCCAGGATCTGTGTCTGCTTCTGTTTACAGGTGATTCCTGCTGGTCCTTTTCTGAGACTGACTCAGAGAATATGAGTGTCATACACAGAACTGGGCTTACTATATTCTCTTATTCTTCTCTTACTGATGACCTCACTCCTAACCCTTGTTGCCTTCCTTCCGGGGGTTTCTCTGCATTTCCCCCACAGCACATGACTTCTCCTCTGGTGTTCCATCCAACCAGTATAAACTCAAGCTGTATGCATGAAATTTGTGAGATGAGACCTGGGGCGGGAGGAGAATGCCTCCACCCATTGAAAAACTGGGACTCTGTTCTGGGACCTTCCCTAACCTTCTGTTATTTTGAGACTGATGAAGGTGACAGATGTAGAGGGGCGGCCTGGGCCTACATGGGATTGGCAATGTGGCCTTTATAGCTCTATTCTCATCTCAGAAGCCCTCCAGATGGAGCCTGAGGATCTGTTCTTCCTGCCAGACCCTTGAGTATGTCTAGGGCTTGCTGAGGAAATGGCCATACTCCGTGATACTTGTGTCAAGAATGGCGCTCATCAGATTTTTCCCTCTCACAG
Seq C2 exon
GGATTCCAGCAAGCACCAGCCCTTTATCACTTAAACAGGAGGAAGAATCTGCAGAGGGAGGAGAGTTGCCACCCTCCCCTTCCACAGATAGCCTGCTTTCTGTGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079573-Zfp783:NR_027963:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGTCCAGAGCAGGCC
R:
CTGGCTCCACAGAAAGCAGG
Band lengths:
230-1091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: