BtaINT0166097 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014768 | ZNF786
Description
zinc finger protein 786 [Source:HGNC Symbol;Acc:HGNC:21806]
Coordinates
chr4:113029665-113030533:-
Coord C1 exon
chr4:113030525-113030533
Coord A exon
chr4:113029792-113030524
Coord C2 exon
chr4:113029665-113029791
Length
733 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAA
5' ss Score
0.12
3' ss Seq
TATCATGTCTATAATTTCAGTTA
3' ss Score
6.22
Exon sequences
Seq C1 exon
CCTGCAGAA
Seq A exon
GTAAAACCACTCATATATAAAGAAGCATATCAGCATTGTTGGTAATTTATAAAGGAAATGGAAAATACGTATCATCAGTGGGGTATGTATACCCATGAATAATGCAATTTAGAAAAACCCGATTTTGCCTATATAAATTGACCTAGTACTTCCCTGGTGGCTCAGACGGTAAAGCGTCTGTCTACAATTCGGGAGACCGGGTTCGATCCCTGGGTCGGGAAGATCCCCTGAAAAGGAAATGACAATCCACTCCAGTACTATTGCCTGGAAAATCCCATGGACAGAGGAGCTTAATAGGCTACAGCCCATGGGGTCACAAAGAGTCGGACACGGCTGGGCGACTTCACTTTCACTTTTCAGGAAGATGACATTGAAAGAAGTTACACAGTGATTTGTTCCCATTTTTGTTTAAAGGAAAAATGAAAGAATTCCATTCTATACATATGCATTCATAGCTGGGCGAAGCATAGAGAAAAAAGTGGAAGGGGTGGTTGTGGTCACCAAACAGAACCACACGACGGGAGTAGGGGAGGAGCTGTTCCCAAGGGAGAAGCTGCCTAACAGACAAAAACACTACACTATGAAATTCTTAAATTGATGACAAGGCAGTGGGGTTTTGAAGCAATAATGACTGTATAAGCCTGGTGTGCTGTAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGAACTGATGACTGTATATGTATCATGTCTATAATTTCAG
Seq C2 exon
TTACCTCTGACTTTTGAGGATGTGGCCATTTATTTCTCAGAGCAAGAATGGCAGAATCTAGAGGCATGGCAGAAGGAGCTTTACAAGCAAGTAATGAGAGCCAATTATGAGATTCTCCTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014768:ENSBTAT00000019646:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]