GgaINT0101060 @ galGal3
Intron Retention
Gene
ENSGALG00000019711 | ZNF777
Description
NA
Coordinates
chr2:405742-408502:-
Coord C1 exon
chr2:408134-408502
Coord A exon
chr2:405874-408133
Coord C2 exon
chr2:405742-405873
Length
2260 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
GGTGCCTCCTGCCATTCCAGGTC
3' ss Score
8.15
Exon sequences
Seq C1 exon
CTCACCCCGCACCCCCCCGGCCCCGTCGCCGTCCCCTCCGAAGGGGTGAAGCCGCCGCCGGCGCCGGTGGTGCACGAGATCTCGCTGTGGACGGTGGTGGCGGCGGTGCAGGCGGTGGAGCGGAAGGTGGAGGCGCAGGCCCTGCGGCTGCTGAGCCTGGAGGGCCGCGCCGAGACGGCCGAGAAGAAAATGTCGGAGCTGGAGAAGGCCGTGCTGGAGGTCGGAGGGCAGCTGGAGCGCCGCTGGGCCGCCCTGACCGCGCTGCTGCAGGAGAGCGCGAGGCGCCTCGAGCACGTCGAGAGGCAGCTGCGGCACCGGGCCTGCTGGGCACCGCGGCACGGGCTGGGCGGCGGCGGGGATGAGCCTCAG
Seq A exon
GTAACGGGGCGGAGGTGGTGGGGATGGGGGACGAGTCCCGGGGCACACAGAAAGAGCCCAAGGGATGAGCGCCAGGTAATGAGAGATGTGCCCTAGGGAACAGGGATGAGCCTCGGGTAATGGGGGCATGCCCGTGGTGCAGGGGATGAACGCCAAGGAATGAAGGGTGAGCCTCAGTGAAGGGGGGTGAGATAGAGGTAGTGGGGTTCAGCCTCAGGTGACGGGGAGGAGGTGATGGGAATGGGGGATGAGTCCCTTGGGTAACTGGGAGGAGCCTCAGGGTGCAAGCGATGAGCCCCAAGGAATGGGGGATGAGCCCCCAGGCACAGGAATGAGCCTCAGGTAATGGGGATGAGTCCCAAGGTGCAGAGGATGAGCCTGAGGGAACAAGGGATGAGCCCTGGGGAACAGGATTGAGCCCGAGGTAGTGAGATGTGCCCTATGGAATAGGGATGAGCCTCAGGTGATGGAGGCATGCCCATGGTGCAAGGGATGAATGTTAAGGAATGGCGAATGAACTCCCGGGAACAGGGGATGAGCCCAAGGTAATGAGGGATGAGCCCTGGGGAATGGGGAAGAGATAGAGGTAGTGAGGTTGAGCCCCGCGTAATGGAGAGGAGGTGATGGGAATGGGGGATGAGCAGCCCGGGTAACTGGAATGGGTCCCAGGGTGCAAGCGATGAGCCCCAGGGCACAGAGAACGAGCCTCAGGTAATGGGGACGAGTCCCAGGGCACAGAGGATGAGCCCACGATAATAAGGGACGAGCCCCAGGGATCAGGCAGTGAGCCCAAGGTAATGGAGACAAGCCCTTGGTAATGGGGATGAGTCTGAGGTAATGGGGATGAGCCCTGGGGCACAGGGCATGAGCTGTAGGGAATGGAGAACAAGCCCAGAGTAACAGGGACAAGGAACAAGTGTAAGGTAACAAGGGTGAGCCCAGGGGAATGGGGTCCAGCCTCAGGAAATAGGGGACAAACTTCAGGTAACGAATGTGTGTAAGGCAGTGAGGATGCACTCAAGGAAACGGCGTGGATGAAATGCTCCTGTGGGTGTTGTGTAGGGCGGGGCAGCGGGGATGTGGCTCCTCTGATGCTTTGCCTTAAGCCCTTCCAGATCCTCCCCATCTCCAGTGAAAAGAGGGAACAAAGTACAGATGTACCACTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCGGAACAAAGTACAGATGTACCACTGTGTTTTCAGCCTTGCTGAGCCCTGGTAGTTCCCTTGCAGGGTAGGACGGTTCCTTCCCATACATGTCCTGCTCTGATGTGATGGGCACTGCCCCAGGTCGATGGTGTGGATCTGGAGAAGGAGCTGCAAACCTCCTGGCTGTTCAGGGAGAGGCCTCAGCTCAGGCCGGGGCATGGTGCCTTTCCCCAGAGCTCTGTGCTGTCACACAGGCATACAAGGGGGCTGTGTGGGGGGAGACGAGGCAAGGCAGTGCTCAGGAGGTGCCTCCTGCCATTCCAG
Seq C2 exon
GTCCCTGCGTCAGGTGAGGACGATGCTGCCTGTTTGCCAGAGCAGGAGTGGGGCGGTGTGGACAGCCGGCAGCAGGAGCTGTACAGGATGGCGGTGAAGGGGAGCTACGAGGCTGTGGTCTCTCTCGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019711:ENSGALT00000007818:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=64.5)
A:
NA
C2:
PF0135222=KRAB=WD(100=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]