HsaINT0187197 @ hg19
Intron Retention
Gene
ENSG00000204947 | ZNF425
Description
zinc finger protein 425 [Source:HGNC Symbol;Acc:20690]
Coordinates
chr7:148815314-148823438:-
Coord C1 exon
chr7:148823288-148823438
Coord A exon
chr7:148815441-148823287
Coord C2 exon
chr7:148815314-148815440
Length
7847 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TATACTATTTGTGATTCCAGGTA
3' ss Score
6.19
Exon sequences
Seq C1 exon
GCGCCGAGTCCCAGCATGCACCGCGCCCGGCCGGCTCTGCCTTTGGGGGCCAGCAGGGCTGTACCTGGGAGTTGGGTTGGGGCGGAGCGGAGGGGAGGCCGTGCCAGGCAGGGCCGGTTCGTGCGGAACCGCCATGGCCGAGCCGGCTTCG
Seq A exon
GTAAGAAGGGCCGGTGGAGGATGCAGGCTCTGTCGAAACTCGGGTCCCTGTCGCAGCTGGATTGGGGTCCGCGTCCAGGGAGTGGGGCGGCCGGGGCCTGGGCCTGGGGGTTGGCAGTGGCCCACGGACTGAGCTCCGGGCTGGGCTGGAGAAGGTGCAGTCTTGCTGCGTGTGCTGTTCTGGAATTGACCTGGGGAAAAGCTGGTCTGGCCGGGCTTGGCCGCGCGCGTCTGTGGCCCCGGCCACTCGGAAGGCTGAGGCGGGAGCAGCGCTTGAGCCCGGGAGCTCTGCGCTGTATATGCGCTAGGTCCGTCGCGCGGTGCCTCTGAGTTCTGCATCTGTGTGGTGACCTCTCGGGAGCGGGGACCACCAGGTTCCCCAGGGAGGGGGAACCGGCCCAGCTCGGAAACCGAGCAGGGCAAAACCCCAGTGCTGATCGTTAGTGGGATCGCGCCTGTGAATAGCCACTGCCCTCCAGCCTGGGCAACAGCCAGACCCCGTCTGTTTAATACATAAATAAAAGTTGGTTTGGGAGAAAGAATCCGGGTGGGAAAGATCTGTTTCTCGGCCTGTTGTAGGCTCAGATCAACAACGCTGTCCCTGCCTTCAGTGTCGGGGCTCTGAACCTCGGGGTCTCTCTGGGGCCCGTGCTCTCCTGCTGAAGGTAGTTTCAGAGAAGCACATCAGTGTTAAGCAGATGAGAAAAAGGAGAAGGAAAGCTGGAACTGAGAGAAATTGGAGACCGCTCCCTCTAGGAAAGGACAGAAAACTTAAAATGAATTGGGTGGTTAGCGTAAATCGAATTTACCGTAAATGCTGTAGTATTGTAATGTAGTATTGAAAATTTGAGCACCGGTTTTAGAGTTTGAAAGGCGTATCCTGAGGCTTAATCCAAGAAACCCTGTTACATTCAGTTAAGTATAACTTGCTTAAGTGTGCAAGTTTTTCTTGTGCCCCCAATGAAATTTTATAATCTTAGGAATGTAATGCTCCTTATTTGCATTTGATTCTTCCCTTTTGCTTCCCACTCCTTTTCCCCACCCTCCTTTGGCAGGTACAGATTCTTTTCTGATTTCTCCAAGCTTTGTTTCTACAGCCAGGCTTTCTTTTTTTCTCTCCTCTTTAAGTGATTGGGAATCTCCTGGAATATTCCTCTCTGTTCTGGGAAAGTTTGTGGTAGCTCTTCTTTGTACATTGAATTTATAGAAAATGTGGTAACAGTTTATTGGCTAATGTATTATTTGGGATAGGCAAGGAAAAATCGTTTTCTTGATTTTCCTTTCCACTGTAGCAGTTTAATGCTAATTGTAAATGTGGTCATAAATGGGAATTTTATAGGTGGAAAACACATGGGTGGCCGGGCGTGGTGGCTCACGCCAGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAAGCCCGTCTCTACCAAAAATACAAAATTAGCCTGGCATGGTGGTGCATGCCTGTAATCTCAGCTACTGGGGAGGCTGAGGCAAGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGAAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAACAAAACCAACAACAACAACAACAACAAAAAAATATGGGTGAGGTACAATAAAACTGTAGAGGAATTTGGTTGAAATCACATTGTAAAAATAACAAGGCCATCCGGACGTGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGTGGCCAAGACGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACTCCCTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTGGCGGGGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGGTGGAGCTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGGGGACTCCATCTCAAAAATAAATAAATAAATAGCAAGGCCAGGCCAGGCGTGGTAGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGCCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAGACAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGTCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCATCACTGCTCTCCAGTCTGGGCGAAAGAGCGAGACTCCGTCTCAAAAAGGAAAAAAAAAAAAAAAAAGAAAAAGCAAGTCCGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCAACTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCGAAACCCGGTCTCTACTAAAAATAGAAAAATTAGCCGGGTGTGGTGGCGCGCTCCTGTAAACCCAACTACTCGGGAGGCTGAGACAGAAGAATCTCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGGACAGAGCGAGACTCCGCCTCAATAAATAAATAAATGAAAATAAAACAAGTTTGAACTTGTTTGTCATAATAGCTGATACTTAAGCTTTCAGGGCTTATGATAGTTTAGATAGAATTTTAGCTCTGAAACTTTTATCTCCAAAAGCCTAAGTGTTAAACGTCAGGTCTCCTAGATTCTCTTATTGGGAGACTTGTAGTGCTTCTGACCAACATTTTCTATATACTTGGGAAGAGCCTTAGCCATCTTTCAAGATGTCCAGTACTTTGCTAGTAGGCTGTCATCTATATTTATAGCACAGAATCTGAAAGGAGTGAAAATGGAATTTTCAAAAGTTACACATGTTCTGTTGCTTCCCTCTTGACACAGTGGATCTGTCCTCAAACACCCAGGAAGAGCCGCCCTGGTTAGTTCAGTCCATACTAGAGGTTGTAGGTTAATGGTCCATGAGCCAATCATGGCTTGCAGACATTTTGTTTGAAACACCCCTGTTAAAATTGGGAATTTTAGTTGCCAACATGAGTTCACATAAAATGATCTATGTTTCCAGTTTCTCTTTAAGAAAATGACACATCCCAGGCCGGGTGTGGTAGCTCACACCTGTAAATCCCAGCACTTTGGGAGGTTGAGGTGGGTAGATCACCTGAGGTTAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTCGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGGACTGCTTGAACCAAGGAGGCAGAGGTTGTAGTGAGCCGAGATTGCGCCATTGCACTCCAACCTGGGCGACGGAACGAGACTCCGTGTACAAAAAAACAAAAACAAAAACAAAAAACCCACGTCTCAATGTAAAACACAGCTACAAAACCTGTAGAAGGTGACACTGGAGAAAATCTTTGGAACCTAGGGCACAGTGGGAAGTCCCTGGTGGTGTACCACCAGCACAATCAATAAAGGGAAAAAAGTGATAAATTGGACATAATCAAAATTTAAAACTTGCTTTTTGAAGGATCCTGTTAAGAGCGTGAAAAGATACGGACTGGGGCCAAAATTTGCAAACCACATATCTGACAAAGGACTCCTGTCTAGACTACATAAAGAGCTCAGCTAGGCAAGGTGGCTCCTGCCTATAATCCCAGCACTTCCGGAGCCTGAGGCAGGAGGATTGCTTGAGCCCTGGAGTTTCAGATTAGCCTGCGCAATGTAGCAAGACACCATCTTTATTTAAAAAAAAAAAGAATCTTCCTTGGACAGTTAAAAAAAAATCCAATTAGAAAATGGGCAAAAGATGGCCGGGAGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGAGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATACAAAAAAAAAAAAAAAAAGCCGGCGGTGGTGACGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCGTGAACCTGGGAGATGCAGCTTGCAGTGAGCCGCGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAACAAAGAAAACGGGCAAAATATATAAAGTGGCATTTTGCCAAAGAGAATATTTTCATGGGAAAAAACACATAAAAAGATGTTTAACATCATTACTCATTAGGAAAACCAAATTAAAGCCACAGTTAGAGATCACTATACACCTATCAGAACAGTTAAAAGTAGTGACATTGCCAAATGCTGGCGATGGTGCTAAGAAATGCTGTCTTATAGATTGCTGGTAGGAATGTGAAATGGCGACCAGGCATAATGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGATCAGGAGTTCAAGACCAGCCTGACCAACATAGTGAAACCCCATTTCTACTAAAAATACAAAAATTATCCGGGCATGGTGGGGCACGCCTGCAGTTCCAGCTGCTCGTGAGGCTGAGGCAGGAGAATCACTTGATCCCGGGAGGCGGAGGTTGTGGTAAGCCGAGATCACACCACTGCACTCCAGCCTGGGCCACAGAGCGGGACTCCCTCTCAAAAAAAAAAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAATGTAAAATGGCCCAGCCACTCTGGAATATAGTTTGGCATTTTCTTTAAAAACTAAACAAATACTCATCATATGACACAGCAGTTGTAGTCCTGGGCATTTACCCCAGAAAAATAAAAACATGCCCACCCCAAATCCTGTACATGATTGTCCATAACAGCTCTTTTGTTAATATCCAAAAAGTTAAAACCAAAATATTTCTCAGTAGGTGAATGGCTAATCAAACTGGTGCATCCATACCATGGAATACTACTCGGCAATAAAAAAAGAAATGAAATACAGTCCTGGGTTGCTTAACGACAAGAATGTGTTTTGAGAAACACATTGTTAGGCAATTTTGTGGTTGTGCAAACATCAGAGTGTGCTTCCAAAAACCTAGATGGTATAGCTTATTTCTCCTAGGCTACAAACTTGTATAGCATGTTACTGTACTGAATACCGTAGGCAGTTGTAACACAATAGTAAGTATTTGTGTATCTAAACATAAACGTCCAGTAAAAATGCAATATTATAATCTTATAGGACCACTGTTGTATATGTGGTCTCTCACTGAAGCATCGTGTGGCACATGACTATATTGGTAAACATGACAACTTGGATGGATCTCAAGGACATTATGCTGAGAGAAAAAAGTCAATTTCAGAAGGTCGCATACCATGTGATTCCATTTATATAACTTTTTTTGTTTGTTTTTTTGAGACAGAGTCTCATTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAGTCACAGCTCACTGCCAACTACGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGGCTACAGGCATGTGCCACAATGCCCGGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGCCTGCCTCAGTCTCCCAAAGTACTGGGATTACAGGGGTGAGCCACTGTACCCAGCCAACATTCTTGAAATGGCAGAATTGTGATGGATAATAGATTCGTGGTTGTGATTATAAAGGGTTGCAACAAGGGAGCTCTTTGTGGTGATGGGATGCAGTTGTCTGTCAGTATCCGCAAGGGATTGGTTCCAGGACCCCTCACAGATACCAAAATCCATGGATGCTCAAGTCCCTTATATAAAATGGTAGAATTTACATATACCCCGTGCACATCTTCTTGTACATAAATCATGTCTCAATTACTTATAATACCTAATACAATATAAACGCTATGTAAATAGTTATGCTGGATTTTAAAAAATTTGTAGTATATTCTTGCATTTTAAAATACATTATTTAAAATTTTACTTTATTTTATTTTTTAATAGAGATGAGGTCTTGCTATGTTGCTCAGGCTGGTCTCAAACTTGAGCTCAAGCAGTCTTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACCATACCTGGCTTTTATTTTTAAAGCAGTTTTGATCTAAGGTTGGTCGAATTTATGGATGTGGAACCTGTGAATACAAAGGCTGACTGTAGTTGTGTTTTTTGATTGCAGTGGTGGTTACATGAGTGAGCATATGCGATGAAATAACAGAATTATATGTACACATTGCACCAATGTCAGTTTACTTGTTTTGATATTGTACTATAATATACAATATGACCTTTTGGGTAAAGTGGGTGAAGGGTACATGGAACCTTTTTAAAAATAATTTTTGGGCCAGGCGTAGTGGCTCGTGCCTTAATCCAGGCGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTTACCACGTTGGCCAGGTTGGTCTCTCGAACCAGGCATGGTGGCACACCCCGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCACTTGAACCTGGGAGTCAGACTTTGCAGTGAGCCGAGATTGAGCCACTGCACTCCAGCCTGGGTGTCAGAGAGAGACTCCATCTCAAAAAAAAAAAAAAAAAATCTAGGCTGGTTTCAAACTCCTGAACTTAAGCAGTCCTCCCGCCTCAGCCTCCCAAGTAGCTGGGACTATAGGCACACTTACATGGAAGCCTTCTGTGCTGTTTTTACAACATCTTGTGAATGTATAATTATTTCAAAGTAAAACATTTTTCAAAAACTGACACATCCAGCAATACTAGACCCAGTCTTCCACAGCAGTAACTGGTTGCTGCTAAGTAAAGCATCCCTTTTTAGATGGTCTTTGTGCTCAAAGGCCTGCTATTCATTCATTCATTTTAGTTTATTTTTATTATTTTTGAGACAGAGGCTCACTCTGTAGCCCAGGCTGGAGTGCAGTGGCAGGATCTCAACTCACTGCAACCTCTGCCTTCCGGGTTCAAACGATTCTCCTGCCTCAGCTTCCTGAGTAACTGGGACTACAGGAATGTGCCATCACGCCCAGCTAATTTTTTAATTTTTAGTAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCTCAAACTCCTGACCTCAGGTGATCCACCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCGACTGGGCCCGGCCCATTCATTCATTTTACTTGGCTCCAGTGGATATTTGTGACCCCTTTGTTGTTTATTTTATAATATGGCACCATCCAGAAATAATTAACATGTTTTCTTTCTGTATCTCAATAAAGTAATGGACATTGAAAAACAAAGTAGCCGTAAAGTAAAAATGTATGTGTATACTATTTGTGATTCCAG
Seq C2 exon
GTAACTGTGACATTTGATGATGTGGCCTTATATTTTTCGGAACAAGAGTGGGAGATCCTGGAGAAGTGGCAGAAGCAAATGTATAAGCAAGAGATGAAGACCAATTACGAGACCCTTGATTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204947-ZNF425:NM_001001661:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)