HsaINT0187197 @ hg38
Intron Retention
Gene
ENSG00000204947 | ZNF425
Description
zinc finger protein 425 [Source:HGNC Symbol;Acc:HGNC:20690]
Coordinates
chr7:149118222-149126346:-
Coord C1 exon
chr7:149126196-149126346
Coord A exon
chr7:149118349-149126195
Coord C2 exon
chr7:149118222-149118348
Length
7847 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TATACTATTTGTGATTCCAGGTA
3' ss Score
6.19
Exon sequences
Seq C1 exon
GCGCCGAGTCCCAGCATGCACCGCGCCCGGCCGGCTCTGCCTTTGGGGGCCAGCAGGGCTGTACCTGGGAGTTGGGTTGGGGCGGAGCGGAGGGGAGGCCGTGCCAGGCAGGGCCGGTTCGTGCGGAACCGCCATGGCCGAGCCGGCTTCG
Seq A exon
GTAAGAAGGGCCGGTGGAGGATGCAGGCTCTGTCGAAACTCGGGTCCCTGTCGCAGCTGGATTGGGGTCCGCGTCCAGGGAGTGGGGCGGCCGGGGCCTGGGCCTGGGGGTTGGCAGTGGCCCACGGACTGAGCTCCGGGCTGGGCTGGAGAAGGTGCAGTCTTGCTGCGTGTGCTGTTCTGGAATTGACCTGGGGAAAAGCTGGTCTGGCCGGGCTTGGCCGCGCGCGTCTGTGGCCCCGGCCACTCGGAAGGCTGAGGCGGGAGCAGCGCTTGAGCCCGGGAGCTCTGCGCTGTATATGCGCTAGGTCCGTCGCGCGGTGCCTCTGAGTTCTGCATCTGTGTGGTGACCTCTCGGGAGCGGGGACCACCAGGTTCCCCAGGGAGGGGGAACCGGCCCAGCTCGGAAACCGAGCAGGGCAAAACCCCAGTGCTGATCGTTAGTGGGATCGCGCCTGTGAATAGCCACTGCCCTCCAGCCTGGGCAACAGCCAGACCCCGTCTGTTTAATACATAAATAAAAGTTGGTTTGGGAGAAAGAATCCGGGTGGGAAAGATCTGTTTCTCGGCCTGTTGTAGGCTCAGATCAACAACGCTGTCCCTGCCTTCAGTGTCGGGGCTCTGAACCTCGGGGTCTCTCTGGGGCCCGTGCTCTCCTGCTGAAGGTAGTTTCAGAGAAGCACATCAGTGTTAAGCAGATGAGAAAAAGGAGAAGGAAAGCTGGAACTGAGAGAAATTGGAGACCGCTCCCTCTAGGAAAGGACAGAAAACTTAAAATGAATTGGGTGGTTAGCGTAAATCGAATTTACCGTAAATGCTGTAGTATTGTAATGTAGTATTGAAAATTTGAGCACCGGTTTTAGAGTTTGAAAGGCGTATCCTGAGGCTTAATCCAAGAAACCCTGTTACATTCAGTTAAGTATAACTTGCTTAAGTGTGCAAGTTTTTCTTGTGCCCCCAATGAAATTTTATAATCTTAGGAATGTAATGCTCCTTATTTGCATTTGATTCTTCCCTTTTGCTTCCCACTCCTTTTCCCCACCCTCCTTTGGCAGGTACAGATTCTTTTCTGATTTCTCCAAGCTTTGTTTCTACAGCCAGGCTTTCTTTTTTTCTCTCCTCTTTAAGTGATTGGGAATCTCCTGGAATATTCCTCTCTGTTCTGGGAAAGTTTGTGGTAGCTCTTCTTTGTACATTGAATTTATAGAAAATGTGGTAACAGTTTATTGGCTAATGTATTATTTGGGATAGGCAAGGAAAAATCGTTTTCTTGATTTTCCTTTCCACTGTAGCAGTTTAATGCTAATTGTAAATGTGGTCATAAATGGGAATTTTATAGGTGGAAAACACATGGGTGGCCGGGCGTGGTGGCTCACGCCAGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAAGCCCGTCTCTACCAAAAATACAAAATTAGCCTGGCATGGTGGTGCATGCCTGTAATCTCAGCTACTGGGGAGGCTGAGGCAAGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGAAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAACAAAACCAACAACAACAACAACAACAAAAAAATATGGGTGAGGTACAATAAAACTGTAGAGGAATTTGGTTGAAATCACATTGTAAAAATAACAAGGCCATCCGGACGTGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGTGGCCAAGACGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACTCCCTCTCTACTAAAATTACAAAAAATTAGCCGGGCGTGGTGGCGGGGGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGAAGGTGGAGCTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGGGGACTCCATCTCAAAAATAAATAAATAAATAGCAAGGCCAGGCCAGGCGTGGTAGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGCCGGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAGACAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGTCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATGGCATCACTGCTCTCCAGTCTGGGCGAAAGAGCGAGACTCCGTCTCAAAAAGGAAAAAAAAAAAAAAAAAGAAAAAGCAAGTCCGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGCGGATCAACTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGCGAAACCCGGTCTCTACTAAAAATAGAAAAATTAGCCGGGTGTGGTGGCGCGCTCCTGTAAACCCAACTACTCGGGAGGCTGAGACAGAAGAATCTCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGGACAGAGCGAGACTCCGCCTCAATAAATAAATAAATGAAAATAAAACAAGTTTGAACTTGTTTGTCATAATAGCTGATACTTAAGCTTTCAGGGCTTATGATAGTTTAGATAGAATTTTAGCTCTGAAACTTTTATCTCCAAAAGCCTAAGTGTTAAACGTCAGGTCTCCTAGATTCTCTTATTGGGAGACTTGTAGTGCTTCTGACCAACATTTTCTATATACTTGGGAAGAGCCTTAGCCATCTTTCAAGATGTCCAGTACTTTGCTAGTAGGCTGTCATCTATATTTATAGCACAGAATCTGAAAGGAGTGAAAATGGAATTTTCAAAAGTTACACATGTTCTGTTGCTTCCCTCTTGACACAGTGGATCTGTCCTCAAACACCCAGGAAGAGCCGCCCTGGTTAGTTCAGTCCATACTAGAGGTTGTAGGTTAATGGTCCATGAGCCAATCATGGCTTGCAGACATTTTGTTTGAAACACCCCTGTTAAAATTGGGAATTTTAGTTGCCAACATGAGTTCACATAAAATGATCTATGTTTCCAGTTTCTCTTTAAGAAAATGACACATCCCAGGCCGGGTGTGGTAGCTCACACCTGTAAATCCCAGCACTTTGGGAGGTTGAGGTGGGTAGATCACCTGAGGTTAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTCGCACATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGGACTGCTTGAACCAAGGAGGCAGAGGTTGTAGTGAGCCGAGATTGCGCCATTGCACTCCAACCTGGGCGACGGAACGAGACTCCGTGTACAAAAAAACAAAAACAAAAACAAAAAACCCACGTCTCAATGTAAAACACAGCTACAAAACCTGTAGAAGGTGACACTGGAGAAAATCTTTGGAACCTAGGGCACAGTGGGAAGTCCCTGGTGGTGTACCACCAGCACAATCAATAAAGGGAAAAAAGTGATAAATTGGACATAATCAAAATTTAAAACTTGCTTTTTGAAGGATCCTGTTAAGAGCGTGAAAAGATACGGACTGGGGCCAAAATTTGCAAACCACATATCTGACAAAGGACTCCTGTCTAGACTACATAAAGAGCTCAGCTAGGCAAGGTGGCTCCTGCCTATAATCCCAGCACTTCCGGAGCCTGAGGCAGGAGGATTGCTTGAGCCCTGGAGTTTCAGATTAGCCTGCGCAATGTAGCAAGACACCATCTTTATTTAAAAAAAAAAAGAATCTTCCTTGGACAGTTAAAAAAAAATCCAATTAGAAAATGGGCAAAAGATGGCCGGGAGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGAGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATACAAAAAAAAAAAAAAAAAGCCGGCGGTGGTGACGGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATGGCGTGAACCTGGGAGATGCAGCTTGCAGTGAGCCGCGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAACAAAGAAAACGGGCAAAATATATAAAGTGGCATTTTGCCAAAGAGAATATTTTCATGGGAAAAAACACATAAAAAGATGTTTAACATCATTACTCATTAGGAAAACCAAATTAAAGCCACAGTTAGAGATCACTATACACCTATCAGAACAGTTAAAAGTAGTGACATTGCCAAATGCTGGCGATGGTGCTAAGAAATGCTGTCTTATAGATTGCTGGTAGGAATGTGAAATGGCGACCAGGCATAATGGCTCAGGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACAAGATCAGGAGTTCAAGACCAGCCTGACCAACATAGTGAAACCCCATTTCTACTAAAAATACAAAAATTATCCGGGCATGGTGGGGCACGCCTGCAGTTCCAGCTGCTCGTGAGGCTGAGGCAGGAGAATCACTTGATCCCGGGAGGCGGAGGTTGTGGTAAGCCGAGATCACACCACTGCACTCCAGCCTGGGCCACAGAGCGGGACTCCCTCTCAAAAAAAAAAAAAAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAATGTAAAATGGCCCAGCCACTCTGGAATATAGTTTGGCATTTTCTTTAAAAACTAAACAAATACTCATCATATGACACAGCAGTTGTAGTCCTGGGCATTTACCCCAGAAAAATAAAAACATGCCCACCCCAAATCCTGTACATGATTGTCCATAACAGCTCTTTTGTTAATATCCAAAAAGTTAAAACCAAAATATTTCTCAGTAGGTGAATGGCTAATCAAACTGGTGCATCCATACCATGGAATACTACTCGGCAATAAAAAAAGAAATGAAATACAGTCCTGGGTTGCTTAACGACAAGAATGTGTTTTGAGAAACACATTGTTAGGCAATTTTGTGGTTGTGCAAACATCAGAGTGTGCTTCCAAAAACCTAGATGGTATAGCTTATTTCTCCTAGGCTACAAACTTGTATAGCATGTTACTGTACTGAATACCGTAGGCAGTTGTAACACAATAGTAAGTATTTGTGTATCTAAACATAAACGTCCAGTAAAAATGCAATATTATAATCTTATAGGACCACTGTTGTATATGTGGTCTCTCACTGAAGCATCGTGTGGCACATGACTATATTGGTAAACATGACAACTTGGATGGATCTCAAGGACATTATGCTGAGAGAAAAAAGTCAATTTCAGAAGGTCGCATACCATGTGATTCCATTTATATAACTTTTTTTGTTTGTTTTTTTGAGACAGAGTCTCATTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAGTCACAGCTCACTGCCAACTACGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGGCTACAGGCATGTGCCACAATGCCCGGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGCCTGCCTCAGTCTCCCAAAGTACTGGGATTACAGGGGTGAGCCACTGTACCCAGCCAACATTCTTGAAATGGCAGAATTGTGATGGATAATAGATTCGTGGTTGTGATTATAAAGGGTTGCAACAAGGGAGCTCTTTGTGGTGATGGGATGCAGTTGTCTGTCAGTATCCGCAAGGGATTGGTTCCAGGACCCCTCACAGATACCAAAATCCATGGATGCTCAAGTCCCTTATATAAAATGGTAGAATTTACATATACCCCGTGCACATCTTCTTGTACATAAATCATGTCTCAATTACTTATAATACCTAATACAATATAAACGCTATGTAAATAGTTATGCTGGATTTTAAAAAATTTGTAGTATATTCTTGCATTTTAAAATACATTATTTAAAATTTTACTTTATTTTATTTTTTAATAGAGATGAGGTCTTGCTATGTTGCTCAGGCTGGTCTCAAACTTGAGCTCAAGCAGTCTTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACCATACCTGGCTTTTATTTTTAAAGCAGTTTTGATCTAAGGTTGGTCGAATTTATGGATGTGGAACCTGTGAATACAAAGGCTGACTGTAGTTGTGTTTTTTGATTGCAGTGGTGGTTACATGAGTGAGCATATGCGATGAAATAACAGAATTATATGTACACATTGCACCAATGTCAGTTTACTTGTTTTGATATTGTACTATAATATACAATATGACCTTTTGGGTAAAGTGGGTGAAGGGTACATGGAACCTTTTTAAAAATAATTTTTGGGCCAGGCGTAGTGGCTCGTGCCTTAATCCAGGCGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGAGGTTTTACCACGTTGGCCAGGTTGGTCTCTCGAACCAGGCATGGTGGCACACCCCGTAATCCCAGCTACTTGGGAGGCTGGGGCAGGAGAATCACTTGAACCTGGGAGTCAGACTTTGCAGTGAGCCGAGATTGAGCCACTGCACTCCAGCCTGGGTGTCAGAGAGAGACTCCATCTCAAAAAAAAAAAAAAAAAATCTAGGCTGGTTTCAAACTCCTGAACTTAAGCAGTCCTCCCGCCTCAGCCTCCCAAGTAGCTGGGACTATAGGCACACTTACATGGAAGCCTTCTGTGCTGTTTTTACAACATCTTGTGAATGTATAATTATTTCAAAGTAAAACATTTTTCAAAAACTGACACATCCAGCAATACTAGACCCAGTCTTCCACAGCAGTAACTGGTTGCTGCTAAGTAAAGCATCCCTTTTTAGATGGTCTTTGTGCTCAAAGGCCTGCTATTCATTCATTCATTTTAGTTTATTTTTATTATTTTTGAGACAGAGGCTCACTCTGTAGCCCAGGCTGGAGTGCAGTGGCAGGATCTCAACTCACTGCAACCTCTGCCTTCCGGGTTCAAACGATTCTCCTGCCTCAGCTTCCTGAGTAACTGGGACTACAGGAATGTGCCATCACGCCCAGCTAATTTTTTAATTTTTAGTAGAGATGAGGTTTTGCCATGTTGGCCAGGCTGGTCTCTCAAACTCCTGACCTCAGGTGATCCACCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCGACTGGGCCCGGCCCATTCATTCATTTTACTTGGCTCCAGTGGATATTTGTGACCCCTTTGTTGTTTATTTTATAATATGGCACCATCCAGAAATAATTAACATGTTTTCTTTCTGTATCTCAATAAAGTAATGGACATTGAAAAACAAAGTAGCCGTAAAGTAAAAATGTATGTGTATACTATTTGTGATTCCAG
Seq C2 exon
GTAACTGTGACATTTGATGATGTGGCCTTATATTTTTCGGAACAAGAGTGGGAGATCCTGGAGAAGTGGCAGAAGCAAATGTATAAGCAAGAGATGAAGACCAATTACGAGACCCTTGATTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204947:ENST00000378061:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains