Special

MmuINT0179872 @ mm9

Intron Retention

Gene
ENSMUSG00000051499 | Zfp786
Description
zinc finger protein 786 [Source:MGI Symbol;Acc:MGI:3026883]
Coordinates
chr6:47776961-47780504:-
Coord C1 exon
chr6:47780395-47780504
Coord A exon
chr6:47777088-47780394
Coord C2 exon
chr6:47776961-47777087
Length
3307 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TATGATGTCTTTCACTTCAGTTC
3' ss Score
8.29
Exon sequences
Seq C1 exon
TGGGGTCGGTGCGGAGTGAGTGCACGCTTTATCGCCCGGGAACGTGGGCGTCGCCGGGGCCAAGGCTCAGGCTAGGAGCGTCCGCGCTGGCCATGGCCGGACCCGCTCGG
Seq A exon
GTAAGGGCCCCGCGCGGACAGGGCTGAGACGGGACCGCGGGCTGCGGCGGCGGCGGGACCCCCAACAAAGCCGCGTCCGCGCGGTCGCCTGCGCCCTGTCAGCAGCGGCTCCATAGCCTTTTCTCACCAGCAGAGTAAACGCCTGCGGGGGATGGGTTTCCTCAGGTTTGCAGTGATATCCATGCGGGTTTACGGTGTCATAATTTAGCCGCACGCAGACCGTGCTCATTGCCTTTCCCTCATTGAGTGTATGAGGGAAGGACCTCACGCCAGGAGGGTAGAAACGGACAGTAAAATCTGCAGGGAGCACGCGCTGTTGGATTATTTCTTGTTTTGTTGAAATCAGGGTTTAAAGGATATGGCTGGTTTTTATTATGTTGTTCTTATTGCTCTACTAAGCATTCTTGATTATTAAATAAGGCTTAGATAAAACACCTTGTACATTCTCAACAGATGTACATACAGGTTTTCAGGATTGAGTATGTAAAAGACAGGTAGCACGTTAATCATTTCTAAGCAGAATTTTGAGTAAGTGGAAGATGGCCATACCTATAGATGGAAAAATAAGCATAAACTAATCTTTCAATTAATACATAAAATCCTTTTCGGTTTCATGAAATAACGGATATTTGTGAATTTATTCAAGATTGGATAATAGGGCTCAGTTGCCTTCCTAATCCAGAGGTTGTGTTGTCCAACCCTCAATGGATACCTAAAACGGAGTATAGTAGGAGCTCTAATGTAATACTTTACATTTTACTCAAGCACGTCCCAGTATACTATTGCTGTGGGGACCCTTGCAGTTTAAATTATGTTGGCAAAACTTGTGTGATGTTGTTGTCTTCACAATTTAAGAGGTTGAAGGTTCATTCTTACTACAAATTTTAGTGACTTTAGCATAGGATTTTTTTTTAAGGTAGGAAAGTGGGAAATGTTCACTTTACTCCTAAAGGAAACATTTGGAAGCTGGACCTGGTGCTGGGGAAGCAGAAGCAGGAGGATTGCTGCAAGACTTGGGCCAGTCAGTCCTGGGGAGTGAGACCTTGTTTCAAAAGCCAAAACCAATTACAACACAGCTTTTCTTTGATATCTTTATCTGAATCACCAGAACACATACTCTTGCATTTTGGTGGCATTATTAAGAAAAGTAAGAGTGTGTGAGCACATACTTTGTTACAGAAGAGTAGATATTTTTCTGTGTGTGAACTAGGCTGTGCTTTCTTAGCCAGTAACCACTAGATGCCAGTAGCATACCTCCTGAAATTGTTACAACCAAAACACTCTCCAGGCTTTGCCTAATGTCCCTTGGAGTACTAATTGTCCTGACTGAGGACCGTTAACCTAGGGTTTCTCACAGAAGAAACTGCATGTAAGCAGATATAGAGTTTTGTTTTGTTTTTCCTTAATACATCAGAAACTAGTGAGTTTTGGTTTGGTTTTTGGTTTTTGAGACAGGATTTCTCTACATAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGGCTGGCCTAGAATCCGGAGATCAGTCTGCTGCTGCCTCCAGGGGGCTGGGAATAAAGGAAGGCATTTGTTATCACACCTGGGACAAAAATGATTGTTTTAAAGTGTTATAACACAAACAACTTGCATTAACTTAAAACATTGGCTTTCTGATGTAAATGCCAGTGAATCAATAGACTTTTTAAAATTCAACTTTAAATACCACCTTGACTTTAACAAAAAGATGAGTATAAAGTTTAAAAAATTTGAAATAATACATACTTTAATAGCCCTAGAAAACAAAGACACACTGATAACGAATGAAGCTAAACTCATTAAAATAGCAGCATGATGTGGGATTACAGTCATATAAAGAGTATTTTCAACTAACAGATATATAATTTCCATAGTTGTCATTTTGAGCATCAGGAAGTATCTATGTTTCCAGTCAGCCATGGTAAGCACAAATACTAAACAGTTTTGAGCTAGGGATATTTCTCAAGGGTAGAGAAGTTGCCCAGCATATGCAAGGTCCTGGATTTAATCTCACATACAGAAACTAACTCACTCTCACTCACACACACACATATTAATAGTCAGGTTGTTCATATCCTTTGATTTAGTAACACTCAAGTTTAGACTCTATTCTACAACAGTAAAAGTGCTCATACATAAAGAATCACACTGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGCCGAGCGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCAACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAACCAGAAGAGGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACGAGAACAAGAACAAGAACAAGAACAAGAGAACCACCACACCAGAGCATTGTTTGTAATGACGGATGATGGTAGCCAAGCACAGTGGCATGTGCGTTTTAATCCCAGCACTGGAGAGACTAAGGGAGGTAGATCTCTGTGAGGCCTAGCCCAGTCCTGGTTTACATAGCCTGTGAAAACCTGCCTTAAAATAAATAAATAACATTTACAGAGAGAAAAGAAGCAGTATGTATATGGCCCATTAGAGGGCTCTGTCTCCTTGTGGAATATAATGCAATAATTCAATTTACCACAGTGTAAGTTTACTCCCTTGTACCAATCTGAATAAATGACCATGACATTAAGTGAATGAAGTTTCGCACTGAGTTGGTTTCATTTTTGTAGTAAATATTCCACCCATACATACAGATATTCAGTTTGAGACGCATAGAAGATGGGTGCAGTGGTGCTATCAGGGCCTCAGCTTAGATTTAGGGGAAACAAATTGCTTTATTATTTAATTACATTTTTTCTTTATTTTTATTTTATGCATATGGATGTTTGTCTGCATGTGTGTCTGTATATCACATCTGTGCAATGCCTCTGGAGAGCAGACAAGGGGGCACTAGGTTCTCTAGGACTAGAGTCAGTGATGGCTGTGAGCTACCATCCGAGAGTTGGGCATGCTGAGCCATCTCTCCAGCCCACAAGTCACTTTTGCAGAAGAGTCTGCTGAGTTAAAAACAGCTGTCCACTCTGTGAGTCTCAAATTACTTATGAGAGTGAACAATGAGATGGTCTTTCGTAGCCGTCATGACGGTATCTGTATGATGTCTTTCACTTCAG
Seq C2 exon
TTCCCACTGACTTTTGAAGATGTAGCCATTTACTTCTCTGAGCAAGAGTGGCAACACTTAGAGGCCTGGCAGAAGGAACTTTACAAGCAAGTCATGAGAACCAATTACGAGACTCTCATCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051499-Zfp786:NM_177882:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000057495





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:149080718-149090622 
ALTERNATIVE
HsaINT0188397
(ZNF786)
Human
(hg19)
chr7:148777810-148787714 
ALTERNATIVE
HsaINT0188397
(ZNF786)
Rat
(rn6)
chr4:77507033-77510152 
ALTERNATIVE
RnoINT0168653
(Zfp786)
Cow
(bosTau6)
chr4:113029792-113034125 
BtaINT0166097
(ZNF786)
Chicken
(galGal4)
chr2:496826-498270 
ALTERNATIVE
GgaINT1002553
([1])
Chicken
(galGal3)
chr2:405874-408133 
ALTERNATIVE
GgaINT0101060
(ZNF777)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"