BtaINT0166158 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011940 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:HGNC:16167]
Coordinates
chr13:57655459-57657237:-
Coord C1 exon
chr13:57657077-57657237
Coord A exon
chr13:57656296-57657076
Coord C2 exon
chr13:57655459-57656295
Length
781 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TCCTTTGCACTTTGTTGCAGGAG
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTGTGAATCCGTCAGGGGAGCCCTCTTGTGTCACCTCAGAATCATATGTTTGCATTGAGAACAGAGAGCAGGAGGAAGAGGAGAGCGGACACGTCTCCAGGAGTTTCTGTCCTAACACAAGCTTAAGAACCATCGGGGACACAGACAGACCGATCGCAAAG
Seq A exon
GTGGGAATTGTGATTTCGAGTTGTCTGTACCCATCTGTGGTCCGGATTTATGCCTCTCTTTTCCTTGTTAGTGTCCAGTGTGGCGGAACTCACTCAGGACACCTAGAGAAGTTTCCTGGCATAAAAAGCCCCTCGAGGCAGATGCCTCAAACATGGTGCTGAATGAGTGGACGGTGAACCATTGGGATGATCTCAGAGTTGGTTAAAAAAAAAATCCCAAGTCCCTTTATAATTCATACTTGAATAAAGATGCTTCCCAGTTGGTGGCGGTGGTAAAGAACCCACCTGCCAATGCAGGAGATGCAGGTTTGATCCCTGGATCAGGAAGATCCCCTGGAGGAGGAAATGGCAAACCACTCGTTTTCTTGTCTGGAGAATCCCCCAAAACAGAGGAGTCCGGTGGGCTACAGTCAGGGGGTCGCAAAGAGTCGGACAGGACTGAGCATACACACACACCGAGTAGCACACATTAAGTAATGATCTAAAACTGGATGCTCAGAGCTGGTTGGATAACTGAGTGATTGAGTTTTCTTAAATCCAGATAAAAATACAGAGCAGTCTCAGTAGCTTATTGTGTGTCAACAGGGAACTCTCCTAGAGTTAATGCATCTATTAGTTATTAATGGAAACTGAGGAGAACATTGTATCGAGGTTCACACTTGGTAAAGAATCAGGACCTCCAGACCTTGTTCTCAATGAGGACCACATCTCTGACCACAAGTTTTTTGATACCAATTAACTTTTTTTCCCTCCATTTATTTTCCTTTGCACTTTGTTGCAG
Seq C2 exon
GAGATTTCATCTGCTGGCGAGCATGGGGCTGGTTGTCCTCTAATCACGGCTGTGGGGTCAGGTTTATCTCTGCCATCTGACTCCTTGGGGGCTAATGACAGCCTTCCAGCCCACAGCAAAGGTCTCGACGTGGGATCATTGGAGACTCACCTGCTGCCGTCCCAGCAGCACATCTCAACAGACCCTACACCATGCGTTTTCTCAGATGCTCAAGAGCCTTCTTCCTTTGTGTCCAAAGGAACCTCTCTCGGCCATGACCTTGCTACCTCTGCAGCTGCCTTCTGTCCTTCCCTGGGGGCAAGAGCAGGCCACACAACCCTGGGAATTCACAGTGTGGAACCGCAAGACCACAGCCAGGGTGAAGAGGAGACTCTCGCACAAAGCTCTCCAGACAGAAAAACGATAGAAGAGGGTGTGTCCCCAAACCTTTTGCCAGGGAAGCCTTCATCTGGGCAGAGAATTTCAGGTTCAGTTACACCAGGGTCCACTGGAAAAATTCATCTTGAAATACCAGCTTTAGGACCAGCTTCAGCTAGTTCACACCAAGAGGAAGGGAAACACAAGTCATGTTTTCCTTCTGGGGGGCAATGTGGGTGTAGGGAAGGACTGGTCCCCTGCCCTCTGGTAGGACCTGACAGTGTGAAATGTCAAGGAACTGGATTCATGGCTCTAAAGGATGATGCCGTCCCTTCTAACCCAGGGCTGCCCATGGAGGTCCCTGCAGCCTCTTTGAAAACCCTCAGGAAGAGAAGTTTGGAAGGAATGAGAAAGCAAACTCGTGTGGAGTCCAGCGACACCAGCAGCGATGATGAAGATCGGTTAGTGATAGAAATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011940:ENSBTAT00000015842:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACAGACCGATCGCAAAG
R:
CCACACTGTGAATTCCCAGGG
Band lengths:
358-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development