RnoINT0168694 @ rn6
Intron Retention
Gene
ENSRNOG00000024693 | Zfp831
Description
zinc finger protein 831 [Source:RGD Symbol;Acc:1565819]
Coordinates
chr3:172800968-172803307:+
Coord C1 exon
chr3:172800968-172801157
Coord A exon
chr3:172801158-172802345
Coord C2 exon
chr3:172802346-172803307
Length
1188 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCCCTTGTGTTTTGTTGTAGGAT
3' ss Score
11.9
Exon sequences
Seq C1 exon
GTGTATGGTAACAAACACATTCCCTCTTGCAGGTCTAAACGTACAAGGAGAGCCATCTTGTGCCAGCAAAGACTTGTCTGTTGATCGTAGGAACAAAGACGGGAAAGGTGACTGTAGTCAGACTTCAGGACCCACGTCTCCTGCTACAAACTCAAAAACCATCTTGGAGACAGACAAATCAACTCTAAAG
Seq A exon
GTAGGAACCACCGTTCTAAGCCACTGCCATCTATCTGTCCTCTAGACTTACGTCTTTATTCCTATATTGCTGCCATGTGGTAAATACCTTGGTCTCCTTCTAGGATTCGCCAGAACCCTAAGATCAGGCCAAAACATTCCTAAACATTTTACACTGAAAAATTAACCAACTTTGCAGCTGTGGGGTCAGCTCAGTAAGTAAATGACGTGCTGTGCAAGTGTGAGGACATGAGTTCAAATCCCAGAGCCTTTATTAAAGCAATCAGAGCCCATATCAAAGCTGGATATATATTCGAGAGCCTGTAACCTTAGCACTCCTACAGGGATATGGGAAATGGAGACGGGAAAACCTCTAAAAGCTCTTGAGATAGCTAGCCTGGTCTGTGCAGAGGAAAAGAAGCTGTGGCCAAGGTGGAAGGTCGACTCACACCCAATGCTAGCCTATGACTTTGATGTGTCCCAAGGACTATCCACTGACTTTGGTTGTGGAAACTTTGGGACGCTTTCTTGAAAACCTCAAGTCTGTGTGATTAATCCCCACAGAAGAAGATGCTACCAAACTTCAGACGTTTCTGCAATGTAAAAATCACTCTGGGCAGAACACGTTGGAACAACACGCCCACTTTACCAGTTCTGCTGGCTGGAGACAGGAAGTGTGGGACAAGCCTTCAGAGCCACATAAGATCACACAGTGACCTGTTTTGTATCAACCAAGAGCTTGGCTGGGGTCAATGTGCTGATTAGTTATTAATGGAAACTTATTTTTTTATTATTATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGGTTTCCGGGCAAACATCCCCCTAATCCCTCCCCCTCCCCTTCTTTATGGGTGTTCCCCTCCCCAGCCTCCCCCCATTGCCACCCTCCCCCCAACAATCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTCAGAGTCCACGGTCAGTCCAATGGAAACTTATTGAGGGAACCTATTGATGTCTGTGCTCAGGAAAGATGCATCAAGACCTCAAGACCTTGCATTCATGGCGGACTGTGTTTCTGACCACAGTTTTCTTTATAGCAATTATCCCTTTCCCTATTTCTTTTCCCTTGTGTTTTGTTGTAG
Seq C2 exon
GATATTTCTCCAGCTGCTGGTGAGCGCCATGACTGTTCTCAGGAGAAGGAGCATGCTGATGGGTTTGGACTATCTCTGCAATCTAATATGCTCTTGGCAGGGTTTCAGGAAGATCTGCCTCAGGGCAAAGGTCTTGGTGTTGAACCTCCAGGAGCTCAGCTGCTATCTTCCCAGGATCAAGTCTCCATAGTTCCCAACTTGAGCTTCTCCTCAGATGTTCCACAGCTGCCTTCTTCCTTTAGATCTAAAGGAATATTTCCCCACCATGACATTGCTACCTCTGTGGCCGCTATTTATGTTTCTGAGGGGATAGGAACAGGGCACAAAACACTGGGGCCTCACGGTACAGAGTCCTGTGCAGAGGAGCCTCTGGCACGAAACTCCCCAGACAGAAGAGCCACACCAGATAGCATACCACAGGTGCTCCTGCCAGGGAGGCCTTCGCCTGGTAAGCAATCACCTGGGAAAACTCTAGAAATACAACCTTCAGTACCGAATTCAGTCGGTTCACACCAGGAGGAAGCAAGAGCCCAGGCAGATTTTCCTTTATGGGGCCAATACGGATGTGGGGATCTGACCATCCAGGGTGCTGCTTCAGGAAGCGAGAGTGGGACTTGTCAAGCTGAAGGGTTAATTACCCCCAAGACTGTCACAGCTCCTTCTAACCAAGGACAACCCTCGGAAGTCCCGGAAGCCCGTTTGAGATCCATCCGAAAGAGGAGTTTGGAAGGAATGAGGAAGCAGACACGGGTGGAGCTCAGCGACACCAGCAGTGATGACGAAGACAGACTGGTCATCGAGATATGATGTGCTTCCAGAGAAAGATGGTGGCAATGGACAAGGCCTGGGGATCTTCTGGGGTGAACATTACCAAGTGTCATGGGCACTGAACTTTATTTATAAAACATCTAGAGACTAGGAAAGCCATCTATGATTTCTTCAAGCCAACTCTAACCAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024693:ENSRNOT00000033863:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGTCTCCTGCTACAAAC
R:
GGCCACAGAGGTAGCAATGTC
Band lengths:
348-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]