HsaINT0188517 @ hg19
Intron Retention
Gene
ENSG00000124203 | ZNF831
Description
zinc finger protein 831 [Source:HGNC Symbol;Acc:16167]
Coordinates
chr20:57828033-57834167:+
Coord C1 exon
chr20:57828033-57828193
Coord A exon
chr20:57828194-57828952
Coord C2 exon
chr20:57828953-57834167
Length
759 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TCCTTTGCACTTTGTTGCAGGAT
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTCTGAATCTGCAAGAGGAGCCATCTTGTGCCACCTCAGAATCACCTCCTTGTTGTGGGAAGGAAGAGAAGAAGGAAGGTGACTGCAGACAAACCTTAGGAACCCTCTCTCTTGGTACAAGTTCAAGAATTGTCAGGGAAATGGACAAACGAACTGTGAAG
Seq A exon
GTGGGCATGATGATTTTGAGCTGCCTCTACCTATTCCTGGTCTAGATGTATAGCCCTGCTTGTTCTTGCTGCTCTTGTTCAGTGTGGCAGAACTTGCTCGGATCACCTTATGAAGATTCGTGGCACAGAAAGCCCATTAAGACAAACAAATAACTCAAAACATTCTGTATCGAATGAGTAGCTTTGGTAGTGCAAACATTGGGATGATTTCTGATGGTTTCTTTAAAAAAAACCCCAAGTATGTTATTACTGCACACCTGAATAGAGAGATGGCTGACAGATGCCACTGCAACATGAAGCCCCCCCAGACAGACTGTGGGGCTGCGTGTTGAAAACCACTAAAATATGTATCCAGACCACATTTGGAAAAACACTCATCCGGAAAAAACCAAAAAACCAAAAAACCCTTCAATACACAGTCCTATAAAATAGTACATCCGCTTCATGAGCGGTAGTGACTTAAAAAAGGAAGCTGAGAACTGGTAAGATAATTGAGTGGTTTTGTTTTTCACAAAGCCAGATAAAAGCACAGGACGTCAGCAACCTATTTTGTATCAATCAGGAGCTTTATTCGAGTTAATGCACCAATTAGTTATTAATGGAAACTTATTGAGGGCGTCATATTGAAGTTCACCCTTGGTAAAGAATCATTAAGACCTCAAGACCTGTTTTCATTGAGGACCACGTTTCTGACCACATTTTTCTTTGTACCAATTAACCTCCCCCCCCACTTTTTTTTTCCTTTGCACTTTGTTGCAG
Seq C2 exon
GATATTTCTCCATCTGCTGGTGAGCATGGTGACTGTACTACTCACAGCACTGCTGCCACATCAGGATTATCTCTGCAATCTGACACCTGCCTGGCAGTGGTTAATGACGTGCCTCTACCCCCTGGCAAAGGTCTTGACCTTGGGTTGCTGGAGACTCAGCTGCTGGCCTCCCAGGATTCAGTCTCAACAGATCCCAAACCATACATCTTCTCAGATGCTCAAAGGCCTTCTTCCTTTGGGTCCAAAGGAACTTTTCCCCACCATGACATTGCTACCTCTGTGGCTGCCGTTTGTATTTCTCTGCCAGTGAGAACAGATCACATAGCCCAGGAAATTCACAGTGCTGAATCACGAGACCACAGCCAGACTGCAGGGAGGACTCTGACATCAAGCTCCCCAGACAGCAAAGTCACAGAAGAGGGCAGAGCACAGACCCTCTTGCCAGGGAGACCTTCATCTGGACAAAGAATTTCAGATTCGGTTCCACTGGAGTCAACTGAAAAAACTCATCTTGAAATACCAGCTTCAGGACCAAGTTCAGCTAGTTCACACCACAAGGAAGGGAGACACAAGACGTTTTTTCCTTCCAGAGGCCAGTATGGGTGTGGGGAAATGACTGTCCCCTGCCCCTCTTTAGGAAGTGACGGTAGGAAACGTCAGGTATCTGGATTAATCACTCGGAAAGATTCTGTGGTTCCTTCTAAGCCAGAGCAGCCCATAGAAATTCCTGAAGCCCCTTCTAAATCCCTCAAGAAGAGGAGTCTGGAAGGAATGAGAAAGCAAACTCGAGTAGAGTTCAGTGACACCAGCAGCGACGATGAAGACCGATTAGTTATAGAAATATGAAGCTTCCAGAGAAACATGGTGTCTGGTCAAAAAGACTGTTGACGCTTCACAAGTAAATGTTGTCAGGCTGGCGGAAGAACTAAACTCTATCTGTGAAACACCTACAGATTAGGAAAGCCATTTTGAGTTATTTACAAGCCAACTCCAACCAACTTCTGACCCCCAACTCAGCCGCAGCGTTCCCCAGCTCCCCTTGGGAGTGCTCTGCTCATCTTCAAATGGTGCCAGGCAGGGCAGACATGGCAAGGAAGCAAACTCTGCAAATGGTCAACGTGCACAGTGACTGGGCCTTGACTCCCAGCCTCGTCTTCTGCACCTGTCCCCCACTGCCTCTCTGCAATCAAATGGCACTAACCAAGAAAGCCACCATCAACACATTTCTCCACAAGTGGACCCCACACAGTCGAGGCAACTGGCTTTCTCCATTAGTAAACTGAGGATTTGCTTCCAAGGTGGAGAGCACACTTGGGATAATTGGAGTAGCTTGACAAAGAGACGGGGGTGTGAACTGGGCACAAAGATACTTCTGTTCATTTTGGAGACAAAATTCAGATACATTAAAAAACTGAAGCTTGTTCAGAGTAATTCACGTCCTTGGTGGAGTTGTAAATACACTTCAAAATGCCTATGATCCGGTGACATGCTGATTACTTTTAAATGTTGCACAAATGGTCAATGCTTATTTATGGTCAGATGATGCAAGCACATGCTCTTGTGCCTGGTGCGTTTGCTGTGGAGATCTCTGAGACTGTCGGTTTTTCTAGTTCTTGCAAAGGAACGGTGTTAAAAGTTAATAGAACTGTCTCTCTGTAATGAGTCATTTTTTGAGAGGGAAAAATTCACTTATTTTCCTCTGATTCTTCTTGTCATATTGTGCTCTGAGCAATTTCAATTAGAGGGTTACATTTTAGTAATCTGTACAGCTTCAACTGATGCCTGCTCGTCGTGACGGGAGCCTTTTAGATTTCCTTCAGAAGCTTCAAGGATACAAAACTAATTGGAGTTTTGACGCTGTTTTACATCTCGGTAATTTTATTTTCGGGGCTTAGTGTTACTTTGCTGTCAAATTAAATCAGCCTCTGTATTGTGCACGTCAGAACTGCACAGAGAAAATTCCCCAGTATTCCAAGCCGGTGCGCCCCTGTGCAGAAGAAAACAGATCTACGTCAGCCAGCCCGGGGGGCAAAGCCTCAGTTCCACTGCCTTCCTCTCCCTCTCCTTCCACGGGAGAGGAGAAACTTAAAGAGGTTTACATTGCTGCATTTCAATAAAATTTTATACTTGCTTTTGGTATGATTTTGTACAATTTGAAATTTGTAGCTGAGCTCTTTTGGTGTAACTTTGATGTAATGATGTTCATATGACATCTTGTACTTCAGAGACACAGCAGCAATGCAGAGCATCTCACACATGTGAATACACTTCAGTCAGTCTGTGCCTGTGACTAAGTATGGTCAAATTTCAAGTATCTTCATGTGAATTTTCCAATTTTGGTGTTTTTCATAGAAAACTTCAATGCCAGACCAGCTTCCCTGGTTACTTAGCATATATTTGTGACCATTTCATATGCACTCATAAATATCCAAGGATTTCAGGCCCAGCCAAGAAAAACATAAGAAGGGAGGTAAAAAGGATGTTGGACATTGACTTAGTGTACTTTTTAAACCCAACAAAAGCGATGTGGTGATTATCTCCCTTTTCGAAGGATTCATGCCACTGTAATGAGAGAGGCAGTGTAGGCAAATGGTCTGAGCCTTGGATGGAGATTGAAGTCCTGACTTTAGCTGGGAAATCTTGGTTAAGAGTCTTTCTGTACCTTAGTTTCCCTAAGTGAGAATAAGAGAGTTGGACAAGACGAATGTATCTCCAGGTTCCAATTTTTCTGAGAATGGTTGATAGAGAAGCTGCTCTCTCCTTAAAATGCATGGACTCAATGGCTTGAAGATATTCCCCATGGGGAACCATTGCCACGGAGGCCTTGCATGCAAGAAGTTTGGGTGGGGACAGTGAGGAACTGAAACACAAGCACCTTCCACCAATTATTGCTGTGAAGAACCTGAGCCTGAAGAAGCTCCATCTAATTTTTTCCCCAGAGTTCCAGATTTTAGGGTGCAATCATCCAGCCTATACATGTGGCTCATAGTTCAAAAAATTAAAAGCAAAACCAGAACTCTCCAGTAGGAATGGAGAAAACCTATCTGTAGGCTGAACTGGCTCCTTTGTCTTAGGAGGCACTGGTCAGGGGAAAAAAGCTGTCTTCCAGACCCCTCCTTTCTGGGTGGCTACTGTGGAATCAACGGGGTCACTGGCTGTAAATCAGTAAGTCATAGCTCCAAACAGCACCAACTTCAGGATGATGGTGGAAGCTCTGTCCCTATAGGAGCCACCGTTGCCAGCTGTCACATCCCAACCTAGGTCAAATATGGCGGAATATTGATTTCGTCTCTAACTCCCTGTATCTCTTACAAAGGTAAAGCAGGTAGCGAAGCCACCTTGCTTCCCTGGTCTTTGCCTAGTGGCTGGCAATGTTTACAAGTGTACCTTACTTTATATCAACATGAATTTGTGAAAAAGCTGTATGTCAATGGATTTTTTAAAAATTAAAAATGTATTTTGAATGACCCTAAGGGAGCTGGCTCTTTAAAAGCATCCTAAGGTAAAGATTTTTTTTAAATGAAGAATCTTTTTATAAAGCAATGAACAATCTCTGATTTTATAAATCTTAATTTTCCTATGGGTTTTCTTAAAGTGAAATACAATTATAAGAATACATTTTAAGGGTAACATTAACAACCTAGAACCCAGTTTGGGTTACTAAAAATAAAATGTCAGTATTATCAATTGATAACTACCACAGTTTTATACTCTGCAAGTGTGTACTGCATGATGGTTAAGGAAAAACAAATTTATTTTAGAACAAAGCAAACCAGAGTTTAAAGATCAGGGATTTCCTTCTTTCCCCAGTGCTAATTTTCCCAGTGTTAATTTTATTATATCTTTAGGTAAGGGTCTTAACCAACTGATGCCTCAGTTTCTTCCACAGAGAATAGTTAGAGGGATGCTGTCATGAACTAAGGGAAGGGCACTGAATTTTTTTTTGCCAATATCAAAAGTGACATTTCCCCATGATGTTCAAGACTCACCAGGTTTCTCTCTCCACCTGTACCTACACCCAGCTAGATCTTGTCGTTAAAGATGTATGGAGGGAAGAGGTTTCAATCCTTCCCTCCTTGGCAACCTACATTGTTAAGTGACTCAAAGTCATGTGATTTTTGGTGGACAACTGGAATCCTCCTTCTTGTAAAACACATTGAAAAACAGCTCATCTCTCCTGTTAGGCTTAACCCTTGAGATTTGAGACAAAGCTAATAATCCCCTTTGGTTCACATCTCACAGTAACCAGGAGAACCTATGGTTCATTTGCCAAGTGATTAAAAAAAAAGATGGAGGAGGGTGTCTCTGAATTTTAATGGAAACACTGCCAATAGCATGGTGGGTAACCTAGGGCAAGACAGACTTTTTCTTCCTGAAATCACTCTTCTAAAGCTGAGACCGGAAGAGGAACCTTGCAGAAGTGCACTGTGACCACAGTTCTTGGCATGAAAGATAAACAATTTGCAGTCTCATGCCAAAAAGTATTTCCTTGCATTTACATTCATTACTTAGAATGATCACATTATTCATTTTTTTCCCCAGCACAGAAATTTGCATTTTGCACAGAATTTGCCTGGTGCAGCAGATCTTTATAGTTATGGAAACTGTCATCATTATCGGAATGTGCTGCTGCTCAACTCCCCAGACATAATTTAATATGGTGAGGAGAATATGACCTGCCTGGCTCTATGGGTGATCATATTTCTACTGCTGCAGCAAGCTGGGCTTGTGTATTTTTCCTCACTTCAGTTGTTCTTCCCATAGTTCATGTAGGGAGGCACTTTGGCTTTTGAAACACTACATTTCTCAATATTTAAGCACAATTTATTGTCCTTATTTTTCAGAACCCATTAAATATAAGGGTCAGAACCTAGAAAATCTTATGTGCTGGATTTCTACCCTGTATGATTCTTTTCATCCATGCTTTGCACTTACGTAGGAATATACATAATTTGGTCTGAAGAAGTATAGGAACAGTTGAGCACATTACTTCACCACTGGAAGAATAGGAACCAGGGAAAAACATCAGCCTCTGCCACTTGGAGCACTAGAGGATGACGGAATGTCTTGTATATGCGGTCAACTGTTCAGGATTTACTACTCAATTGGTTGTTCACAATCAGGGAAATGATTGGCTTCTTGGTTGTTTGTTGAACTTTCTTTCTTTATATGGTTAAATTATTTTGTTTTGATAAAAATAAAACTTAAAATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124203-ZNF831:NM_178457:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTTGTTGTGGGAAGGA
R:
AAGGAAGAAGGCCTTTGAGCA
Band lengths:
354-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)