BtaINT0166314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014834 | ZP3
Description
Bos taurus zona pellucida glycoprotein 3 (sperm receptor) (ZP3), mRNA. [Source:RefSeq mRNA;Acc:NM_173974]
Coordinates
chr25:34963801-34964163:+
Coord C1 exon
chr25:34963801-34963904
Coord A exon
chr25:34963905-34963985
Coord C2 exon
chr25:34963986-34964163
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
ACCCCCGGCGTGCCTTGCAGAGA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGTAGCTGGGCCATCCAGCCCACCTGGGTGCCATTCAGGACCACAGTGTTCTCGGAGGAGAAGCTGGTTTTCTCTCTGCGCCTGATGGAGG
Seq A exon
GTGAGCAAGATGGGCTGGGAGGGGTCAACTGTTGGGGGGGGCAGTGCTCTGGCAGGCTCTCACCCCCGGCGTGCCTTGCAG
Seq C2 exon
AGAACTGGAGCGCCGAGAAGATGACGCCCACCTTCCAGCTGGGAGACAGAGCCCACCTCCAGGCCCAAGTGCACACTGGCAGCCACGTGCCCCTGCGGCTGTTCGTGGACCACTGCGTGGCCACGCTGACGCCAGACTGGAGCACCTCCCCTTACCACACCATCGTGGACTTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014834:ENSBTAT00000019756:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCTCTGCGCCTGATGG
R:
TGTGGTAAGGGGAGGTGCTC
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]