HsaINT0188694 @ hg19
Intron Retention
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 (sperm receptor) [Source:HGNC Symbol;Acc:13189]
Coordinates
chr7:76062244-76062964:+
Coord C1 exon
chr7:76062244-76062347
Coord A exon
chr7:76062348-76062786
Coord C2 exon
chr7:76062787-76062964
Length
439 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CAGCTGACTGTGTCTTTCAGAGA
3' ss Score
6.56
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
Seq A exon
GTAAGAGAAGAAGGCTGGGTGGGACATCTGTGGAAAGACCTGGGCCATCTCAGACCCCTGCCCTTGGCTGTGTCTTTTTTTTGTTTGTTTGGTTTTGGTTTTGGTTGGTTTTGGTTGGTTTTGGTTGGTTTTGGTTGGTTTTTGAGACAGTCTTGATCTGACCTCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAGTCTCCACCTCCTGGGGTTCAAACGATTCTCCTGCCTCAGCCTCCCGAGTAACTGGGACTACAGGCTTCTGACACCACACCCAGCTAACTTTTCTATTTTTAGTAGAGATGGGGTTTTGCCACGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAGGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGCTGACTGTGTCTTTCAG
Seq C2 exon
AGAACTGGAACGCTGAGAAGAGGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTCCAGGCAGAAATCCACACTGGCAGCCACGTGCCACTGCGGTTGTTTGTGGACCACTGCGTGGCCACACCGACACCAGACCAGAATGCCTCCCCTTATCACACCATCGTGGACTTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-ZP3:NM_001110354:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.9=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PU(47.2=98.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAATGTGAGCAGCC
R:
TGGAAGTCCACGATGGTGTGA
Band lengths:
278-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)