MmuINT0180732 @ mm9
Intron Retention
Gene
ENSMUSG00000004948 | Zp3
Description
zona pellucida glycoprotein 3 [Source:MGI Symbol;Acc:MGI:99215]
Coordinates
chr5:136460032-136460401:+
Coord C1 exon
chr5:136460032-136460135
Coord A exon
chr5:136460136-136460217
Coord C2 exon
chr5:136460218-136460401
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCTCTCTGTACCCTTTCAGAGA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAGCCCACCTGGGTTCCCTTCAGAGCCACTGTGTCCTCAGAGGAGAAACTGGCTTTCTCTCTTCGCCTGATGGAGG
Seq A exon
GTGAGTCAGAGGGCTGGAGGCGTTGGTAGGGGGAATGCAGATGTCGCTAGGCTGTCCCTAGCCCCTCTCTGTACCCTTTCAG
Seq C2 exon
AGAACTGGAATACTGAGAAATCGGCTCCCACCTTCCACCTGGGAGAGGTAGCCCACCTCCAGGCAGAAGTCCAGACTGGAAGCCACCTGCCGCTGCAGCTGTTTGTGGACCACTGCGTGGCCACGCCTTCACCTTTGCCAGACCCGAACTCCTCCCCCTATCACTTCATCGTGGACTTCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004948-Zp3:NM_011776:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTGAGCAGCCACCCTAT
R:
AGTCTGGACTTCTGCCTGGAG
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: