BtaINT0166395 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001385 | ZSCAN2
Description
Bos taurus zinc finger and SCAN domain containing 2 (ZSCAN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001101190]
Coordinates
chr21:22702080-22704340:+
Coord C1 exon
chr21:22702080-22702199
Coord A exon
chr21:22702200-22703824
Coord C2 exon
chr21:22703825-22704340
Length
1625 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTTCTCTCTCTCATTCTTAGCCA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GTCCATTGTTCTCGGTGCCCCTCGGGCTTGAGCCGCTGCGACTCCGGAGGGGCCGGACCGTGCCCGCGGGCGCTTTAGCGCGTGGAGCGACCGAGGAAGTGGCATCCGGTCTCTGGAGAG
Seq A exon
GTGAGCCCGGAGACAGACAGCCGGAGCCGCGCTGGCCGGGGGAGCAGCCCAAGGCCAGGGGATAACGGGCCTGGAGCCAGGGCGGGCAGCCCTGCTGGGGGAGGGGCGTCGGGGGCCGTGTTCGTGTCCTGCGGGCCCCCGGCTGTCCGAGCTTAGGCGCTAGGTCGGGCTCAAGGAGCCGACCTGAACTCTTCTCCCTAGCGGCGAGCTCCTTGTACATCCAGCCAGGGGCACAGGCTTTAGACTGAAAGGCACAGTGGACGACATCCCGCGCAGCTCATTTTAAAAAATGGGGAAACTGAGCTTCTGAGGGGGCGTGTCTGGCCCCAAGTGGGACAACGCTTAAATTGTCTGGGAACGGTTTTCCTGCCCCACCCCCGACCCCCCCACCAAGTTAAGAATTGTGTTATAACTGTTTGTTCTAGCCATTTGGTGAATACAGTTTGAGAGCTCTAGTGTTTCCACTGGCTTTTCTTTTTTCTTCTTTTTAAAAAGTTTTCCCGGGAGTGTTTCTGAGTCTTTATGCTGTAGTGATAATTTTTAAAAATACTTCATTGCCTTTTAGTCTTTGTTTTAAATAACTGCTCTCAACATTTTGTAGAATTTCTATCCAGGTTTTTTTTTTTTCCTTGTGTATGTGTTCATTTTTAAAAGGAATTGGGGTCATACTGTGTCTGTGGTTTTTCTATCTTGCTGGTTTTGTTTTTATTCATTAGTTTTCTTATTAGGATTATCTGAAATCATTAATGATTAATAATTATTGTCAGCATAATTTTTTAAATATTTAAAAATACATACATCAGAGCACACAAATCTTAAATTTCATATGTATGCTCTTATGCAGCCATTGCCAAATCAAGACATAAAACATTTCCAGCTCCTTTGAGCCCCTTCTCAGTAACATTCCCCTACCCCCTACCCCCCCCACAACGCACCCCCCCCCTCACAAATGTAGCCATTATTACATCATCAGCGTAGTTTTTAGTACATTTCACTGTATGGATGTGCCATAATTAACCATTCTCCTGCTGCTGGATTTTAAGGTGTCCGTTTTTTTTTTGCAATTAGAAACGGTTGTGTGTCCTTGCAAATATTTAGTAAATTTAGCAAAGATGATTATTTTAAAACATAAATTCCTGAGGGGCCATGTATAATAATGCAGTTGAGATATTTCCTTCCTTTCACTGAGGCTTACAGTGCCTTGACATCTGATCCTTTGTAAATTCTTAAGACGTTCCTTTCAGATTAGTAGGATGGGTGTTCTTATCTGTTTATTAGGTAGTCCGTGAGATTGTGTGACTGAGTTGTATGTTAGGTCAAGGTCACTGACTCTGCAGCAAATCTGAACTTAGAGCAGGATAGCTCTGTCCTGGGTTCTTGCAAGGGCTTTGAATTTCTCATTGCTTTGGTCTTTTGGGAAGAAAAACACTGTATTTTGTGCTTGTGATTCTTCTCTTGCCACAGAGATGGTTTCAGGAATAAGCCATTTTTCCTTTAAGAGGGACAGGAAACTTCTCCTGATTTGCGGATGTAAGAATCATTTGGTGGCCTGACCTGGGCTGTTGTGAGTTAGATTGTTTTAGGACCTTTTACTTATTGATCCTAGTTCTCTCTCTCATTCTTAG
Seq C2 exon
CCAGACCACTTGTTGAAACTGGAGAAGGGTGCCGTCTTCTCAGGGAGCCTGCCTGGAGAAGACTGAAGGTCAAGATCAGAAGCCTGAGTGATTCCAACCCAAGGACGTGGATGATGGCCTCAGAAGGGCCAAGAGTAACTGCTCCTCGAAGCCCTGTAGTCTGCCTCCCTCAGAAGGAGGACAACCAGGAGGAGGAGGTGGCCACCGTGATCCTGGAGGACGACTCCTGGGTACAGGAAGCTGTGCTGCAGGAAGATGGCCCTGAGACCGAGCCCTTTCCCCAGGGTGCTGGCAAGGGCAGCCCCCATGAGGACGTGGCCGGAGGGCCGCAGGGGGCACTCGGCCGCCTTCGAGAGCTCTGCCGGCGCTGGCTGAGGCCAGAGATGCACACCAAGGAGCAAATGCTGACCGTGCTGCCCCGGGAAATTCAGGCCTGGCTGCAGGAGCATCGGCCTGAGAGTGGCGAGGAGGCGGTGGCCCTGGTGGAGGACTTGACCCAGACCCTTCGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001385:ENSBTAT00000001821:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.746
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.5=62.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGCCGCTGCGACTC
R:
ATCTTCCTGCAGCACAGCTTC
Band lengths:
351-1976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]