HsaINT0188810 @ hg19
Intron Retention
Gene
ENSG00000176371 | ZSCAN2
Description
zinc finger and SCAN domain containing 2 [Source:HGNC Symbol;Acc:20994]
Coordinates
chr15:85144249-85147564:+
Coord C1 exon
chr15:85144249-85144366
Coord A exon
chr15:85144367-85147050
Coord C2 exon
chr15:85147051-85147564
Length
2684 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTCTCTTTTTTGTTTCTCAGCGG
3' ss Score
9.57
Exon sequences
Seq C1 exon
CCATTGTTCTCGGTGCCCCACGGGCTTGAGCCGGGGTGAATCTGGAGGGGCCGGGCCGAGCCCGGGGGCGCTTTCGCACGCGAAGCAACCGCTAGAGCAGGACCTGGTCTCCCGAGAG
Seq A exon
GTGAGCCGGAGAGGCAGGCCTGGAGCCACGCGGACCCCGGGCAGTAGCCCGAGGTGAGGGAATAGTGGGCCTGGAGCCAGCTGCCGGCAGCTCTGCTGGGGGAGGGGCGTCGGGGTCGCGCTCCGTATCCTGCGGGCCCTGCAGCCCCGATTTACGCGCCGGCTCCGCTCAGCGAACCGTCCCGGACGCGTCTCCCTGGCGGAGAGCTCCTTGCCTCTCCTACCGAGAAGCGCAGGCTTTGGACGGGAAGGGGCATTCGACGACATCCCGCGCAGCGTACACGTTTTACAGATGGGGAAACTGAGGTTCAGAGGGGGCGTGTCGTGCCCCAAGTCAGACCGCAAATTAGCTGACCTGGCACACTTTTCCCAGGCTCCCAAGTAGGAAGAGTTCTCTTACACCATATGCCAGTATTTCTTCTAGTCATTTGAGTAAATACACGTTGAGAGCTTCGGTTTTCCCACTAGCTTTTATTTTTTGTCCTTTTTTTTTTAAGCTTTTGTCAGCTTTTCTCCCCTTTTCATTGAGGGAGGGTTGTTAGTTGAGTCTTTATGATGTAGTAATGATTTTTTAAAAAATTTTTTTATTTTTGTAGAGACTGGGTCTCACTCTGTTGCCCAGGTTGGTCATGAACTCCCGGCCTCAAGCCATCTTCCCTCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCTACAGCGCTTGGGCTAAAAATAATTTTGTATTGCTTTTATAATATTTTAAGTCGTTTGCAATTCCACTGCTTTCAATATTTTGTAGGTGCCGTCCCGTTCTTTTTTCCTGTGAGTTCATTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTTTTGTTGCCCAGGCTGGAGTGCAATGGCCTGATCTCCGCTCACCGCATCCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGATTACGGGCATGCGCCACCACGCCTGGCTAATTTTGTTTTTAGTAGAGACGAGGTTTCTCCGTGTTGGTCAGGCTGGTCTCGATCTTCCGACCTCAGGTGATCCGCCCGCCTCAACCTGCCAAAGTGCTAGGATTACAGGTCTGAGCCACCGCGCCCGGCTGTGAGTTCATTTTTAAAGGGAATTGAGGACTTACTGTGTCTATGGTTTTTCTGCCCTGCTGATTTTGTGTTTATCCATTATTTTCCTATCAGAAGGATTATCTTAAATCATTAATGATTAATCTTTGTCAATATAATTTTTAAAATATTAAAAACATACAGCGTAATGTGCAGATCTTAAATTTCATATGTTTGCTCTTGTGCCGCCATTGCCAAATGAAGATATTGAAAATTTCCATCATCCCAGAAGGCTCCTTTGAGCCCCTTTCCTGTCATTACCACCTAAAGGTAGCCATTATTATAGCACAGTTTCTTTTCTTTTTTTTCCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTGGCTCTTTCGCCCAGACTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCCTCCTCCCAGGTTCGGGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCGTCACCATGCCTGGCTAATTTTTGTATTTTTGGTAGAGACGGGGTTTCACTATATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCGCCTGCCGAGGCCTCCCAAAGTGCTGGGATTACAGGCAACCACGCCAAGCCTATAGCACAGTTTCTAATACATGCTGCTATATGGGTGTGTCATAGTTTATTAGCCATTCCCTGCTGCTGGATTTTTAAGGACTCGATTTTTTGGTTATTTTTTTAAGATAAAGTACTGAGGGGCCGAGGCTGGATTGGAGAGTATATGCATGTTTTAAACTTCATACTTAAAGTATGGTAATAATGCAGTTGAGATATTGCCTTTCTTCCAAAGAAGCTCAGAGTGCTTTGACATCTGATCCATTGCTGATCCTTAAGATGCCCCCATAAAAACAGAAACATGAGTGTTATTATCTTTATTAGGTGGTCACCGAGTTTGGTGACTAAGTTGTATGTTAGGTCAAGGTCACACAGTGCAAGTCGAAACTGACTTAGGAGAGTCCTCAGTATTTCAGTCATGGGTTTTTCCCGGGGACTTTGCATTTCTGATACTCATTCTTTGGTGTTTTGGAAGGAACAATGCTGTATTTTTTGTGCTTGGGATACTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCTGGGCTGGAGTGCAGTGGCGAGATCTGTGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGTAGCAGGAACTACAGGCCCCCGCCACCACGCCCGGCTAATTTTTGTATTTTTAATAGAAATGGGGTTTCACCATACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGACACTGCACCCAGCCTTCTTTTACCACAGAGAGATGTTTTCAGGAATAAGCCATTTTTTCTTTAAGAAGAACAGGAAACGTCTGTTGGTTTGCATATGTAAGGGCCACTTGGTGGTCTGACCTGGGCTTTTGTGAGTTAGATTGCTTTAGGACAGTCTACCTATGGATTATGGTTCTCTTTTTTGTTTCTCAG
Seq C2 exon
CGGGACTACTTGTTGATATTTGAGGAGGGAAGTGTCTTACCTGAGAGCCTGGCTGGAGAAGACTGAGGTCCAAGGCTTGAAGCCTAAGTGATTGCCCCAGGACTGTGGATGATGGCTGCAGACATCCCGAGAGTGACCACTCCGCTGAGCTCCTTGGTCCAGGTGCCTCAAGAGGAAGATAGACAGGAGGAGGAGGTCACCACCATGATCCTGGAGGATGACTCCTGGGTGCAAGAAGCTGTGCTGCAGGAGGATGGCCCTGAGTCTGAGCCCTTTCCCCAGAGTGCTGGCAAGGGCGGCCCCCAGGAGGAGGTGACCAGGGGACCACAGGGTGCACTCGGCCGCCTCCGAGAGCTCTGCCGGCGCTGGCTGAGACCAGAGGTACACACCAAGGAGCAGATGTTAACCATGCTGCCAAAGGAAATTCAGGCTTGGCTGCAAGAGCATCGGCCTGAAAGCAGTGAGGAGGCAGCGGCCCTGGTGGAAGACTTGACCCAGACCCTTCAGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176371-ZSCAN2:NM_017894:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.831
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.5=62.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)