RnoINT0169469 @ rn6
Intron Retention
Gene
ENSRNOG00000022164 | Zscan2
Description
zinc finger and SCAN domain containing 2 [Source:RGD Symbol;Acc:1584548]
Coordinates
chr1:142679345-142682602:+
Coord C1 exon
chr1:142679345-142679942
Coord A exon
chr1:142679943-142682100
Coord C2 exon
chr1:142682101-142682602
Length
2158 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
CCTCGTTTCTTTCTCAGCAGTGT
3' ss Score
7.05
Exon sequences
Seq C1 exon
ACAGGGGCCTTTGCTTGCGCAAATTTCTTCTCTGCTTAAAGTCAGCTTTTGGCTCTTAAGGGCCCAACAATATCATTTACCACTCAATTCTCAGCTAAAAAGGACTGATAAATTCACTCAGCTTTCATTTTTTATAGATAAATACACGCACGCTTTAGAGAAGTGAAACTATCTGTTTCATGTAAAAAGCTTAGGGCAGTACTAGAAGACAGATGGCTAGTCCTGGGACTTCCTCTGCCTCTCATCCTGAGGCATTGCCTAAGGCTATCAAACCTCCGGTTCGCTCAGGTACAGAAGTCTGTTCGTTTCTGGTAAACTACATTTCACACAATGCATCGGGCCGACCTTACCTCCCACAGCCCAGCTTGACGCTGTTTTCACCAATAGTAGAGTAGAATTTGAGGAACTGTCGTGGATAGCCAATGAGAGTGGCTGTGGGCGGGCCTCTCCTGTCCATTGTTCTCTGTGCCCCTTGGGCTTGAGCTGAGGTGAATCCAGAGGGGCCGGACCGGGTCGGGCCAGACCGAGGGGTGCTTTTGCGCGCAGAGAGATAGCGGGAACAGGACCTGGTCCCTGGAGAGGCGAGCGGGAGAGGCAG
Seq A exon
GTCTGGAGCCGCGCGCCCCGAGGGGAACAGCCAGAGAGAGGAGCGAGTAACGGGCCTGGAGCCAGCTGAGGGCAGCTTGGGGGAGGGGCGTCGGTGTCCTCGCCCGGCAGGCTGGACGCTCAGTTCTGCGTCCCGGTTCCTCGTGGCCCACAGGGTTCGGTTCACGCCAGAGCTCCGTGTACGCAACCTAGGAGCGCAGGCTTTACACTGGGAAGGGATGCTCGACTACATCCTGCCGAGCCTCTTCCTTGACCAGTTGGGGAAACTGAGGTTCTGAGGGGGCGTGTCTTAGTCAGGTTTAGCGAATGAGCTGTCTAGGTTCAGTGTTCCCGGGCTGTCCAGGAAGAATTACGACCTTTTTGTGTTTCACGTAGCCATTTGGACAAATTGACATTGGGAGCTTCAGTTTTCTTTCTGTTGTTGCTGTTCTGTTTTTACGTTTGCTATTTTCATGGGGGGAGGACATGTTATCTGATTCTATGGTGTAATGACTTTTAAAAATAAATATTCATTGCTTTCATAATACTTAAATAGTTTTTAATTCCACTGCTCTGAATATTTTGTAGAGCTACTTACTCAGGTCTAGCGCCCCCCCACCCCCAATGATCCTCGTGTATATTCATTTTAAAAGAAATTGGGCATGGCTGTAATCTCAGTACTCAGGAAGCAGGACAGGCAGATCAGGAGTTCGAGGCCAGCTTGGGCTACATAGTGAAATCTTGCTTCAGAAATAAAAATGAACAGAATGTCCGTACTGAACACATAGGAATGTTCTCTTGTTATTGTTCCCAAACAGTACAGTATACCAACTGTTTACATATTATTTACACTTAGGTATACGTTGTCTAGAGGTGATTGGAGGTATTTTATTTAGGGGACTTGAGCATTCACAGATTTGGGAATCTGGGAGATTCCCTGAGGATAGATAGCCTCCATTGAAATGTCACACTGATGGCTTCTAGTGAAGCTGGGAGCATCCATTACTTTTTTTTTTTAAATATTTATTTATTCATTATATATAAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGGGCATCAAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGAGCATCCATTACTAATTATTAAGACGGTTCATATGATAAGGATGAGTGTTATCTATTAAGTGATCACTGAGGTTGAATGACCTCTTTGTTAGGTCAAGGTCCTTTGCTCTGAAGGAAGTCTGAACTGACTTAGGGCAGAATATGTTACATTCCTACTACTCTTCCTGTGGTCTTCTGAAAAGAGCAATGCTGTGTGTGGGGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGTTATTATTATTCTGGGGGTTGCTATAGTCCCTTGTGTTTAAATATCTACTAGGGGTTTCTACCCCACTTCAGATCATTTTAGTTCCCAGATAAAAAGACATAGAAACCTTTAGATTTATAATAAGCTTAAAAGCATTAGAGATGAGCAGATATCAACCCTCTATGCTATTTTGTCTACTTCTCTGTGTTGATCCCCGAGATGTCACTTGCCATGTTCTGCCTGGGCCGCTCCTCCATCAGGACGGCCCTCATGGCCCTCATGAGCCACCTACCCTATGGCCACTTCCTTCCTTTTTTCTCTCTCTTCATGGTTCCTACCTTAGATCCCAAGCCTGAAAACCTTTGTTCCACCCCATCTCTTGTTCCCAGCCATGTCTATTAACCAGTCAGCCATGTCTATTAACCAGTCATGGAAAAGTTAGGAGGTGAGGTCTACAGAGCGTCACTTGGATTTGGTGTACATGAGATCTTCTAGTTTCGGGCAACCAGATTTTGGGGGCCAGTATTTAGCATTTGAATACATAGTAGGATCAGACCAACCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATTTCTTCTGTCATAGAGAGTCACTGTTTTTAGGAGTAAGGCAGCAGCAGGCCTCTTGGTTTTGAACATAAGGAGGCTGCTGTGAGATGGCTGTAAGATAGTTTCCTTAGTGATTCTGGTTCTCTGCCTCGTTTCTTTCTCAGCAG
Seq C2 exon
TGTTTCTTGTTAAGATTGGAGGAAAGACAGCCTTCTCAGAGAGCCTGGCTGGAGACAGGTGTGAGACTTGAAGCCTCTGTGATCATCCAGGAAGCTGCAATGGCAGCTGAAGTGCCAGCAGTGAGCACTCCCCTCAGCCCTTTGGCTCAGGTGCCTCAAGAAGAAGATGAACAGGCAGAGGTTACCACTATGATCCTGGAGGATGATTCGTGGGTACAGGAAGCAGTGCTGCAGGAGGATGGCCCCGAGTCTGAGCCCTTTCCCCAGAGTACTGGAAAAGGCAGCCCTCAAGAGGAGGGTACAGCTGAGGGACCTCGGGGTGCGCTTGTCCGATTTCGGGAGCTCTGTCGGCGCTGGCTGAGGCCAGAGGTGCACACTAAGGAACAGATGCTGACTGTGCTTCCAAGAGAGATTCAGGCCTGGCTGCAAGAACATCGTCCTGAGAGCAGCGAGGAGGCAGTGGCCCTGGTGGAAGACTTGACCCAGACTTTTCCGCACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022164:ENSRNOT00000034267:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.822
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(95.6=63.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]