BtaINT0166417 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014478 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:HGNC:26673]
Coordinates
chr21:55630358-55633760:-
Coord C1 exon
chr21:55633293-55633760
Coord A exon
chr21:55631224-55633292
Coord C2 exon
chr21:55630358-55631223
Length
2069 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
AATTTCTATTCTTATGTTAGGTT
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGTGCACTGGGGCTATGAAGAGACAAAGACCTACCTTGGAATTCTTAGTGAGACTCAGTTTTACGAAGCCCTTCGGAACTGTCACCGCAACAGCCAGTTGTATGGAGCCGTGGCTGAGCGGTTATGGGAATATGGCTTCCTCAGGACACCGGAGCAGTGTCGGACCAAGTTTAAGAGCCTACAGACCAGCTATCGGAAAGTCAAGAATGGCCAAGCACCAGAGACCTGTCCCTTCTTTGAAGAGATGGACGCTTTGGTGAATGCCCGGGTGGCTGCCCGGCCCAGTGACGGCCAGGAAGAAGAGACAGCCTTATGCCCCATGCAGGAGACCAGTGAGGCTGAAGCTGAAAAGCAAGCCGAGCCGGCAGTCGAGGCCATAGAAGATGATTCTGAAGATGATGAAGAGGATCCCGAAATACCTCCAGAGGCACTGACCCGTGCTCCAGTCTTATTTCAGAGCCCCAGCG
Seq A exon
GTAAGATCCTGTTCTTAAGGTAGAAGCAGCAAAGGGGAGGCAGTGGCATCTAGAAGAAAAATTATCAGATTGAGGACCAGGAGAACTGGCCTCTACACCCAATACTCAGGGATTCTTCTCTTTTCTCCAGGTTTCCTGTCTATTTAGGCAGCTTTCCACTTGACTTGCCTCCTCACGCTATAGCATCAATCTGAGATGGCTGCAGACTTTGTAAATGTGCCCTCATCTGCACGTGAGCTGCTCAGTTACTAGCCAGCGTACCTGGCAGGGACTCTGAAAGCTAACATTTCCCAAACGGCATGTCCTGTACACACAGTACATGAAGTTGGGTTTTTAAAGCTCATTCTCATTTCTGCTTTTTCTTCTAGTTTCAGCTTATACACCATCTGTATGCCTGCTTTATTCATATCTATGAAAACCTGATAATCTCTTTCTTCAGACACACTTAACGCAAAGTCTGAAATTTCTGAGGGAACTGACCCTTTGAATCTTATTTACTGTTGAAGAAAAAAAAACATAAAACTTCATTATGGCTTCCCTCCTTGCAGGAAGAATTCTGTTTTTGGAGTCATACATATATATGTATGTGAATATAGACTATGTTATTAGTTGAGTACCTTAAAGCAAGTTACTTAACCCTGTAATTTTGCTTATTTATTAAGACCAGCCTCACAAGATTGATGTAAGTGAAGTACCACAGTGAGGCACCTAGCACGGTACTTGGGCATTTGATAAACAATAGTTTTCTTTTCCAAAATATTCTTTAGATCTGCATTCTCCAAGTGTGCTCCACAGAGCATCAACTCCATGAAGCTATTAACATGTTCCACTAAGTAACAGCTTCTAGGTTTAGGAAATGCTAAGTACCCCTCTCAGAGGCTCATAATTTATAGTCACATATTTAAGTTTCTGAGATTTCAGTTAATATAATGAACCTCCATTTCATGGGTCTAATCCTAACACTGGGCTTCTGGGTAGAAATAGTGCTTTAAGGGGTACATGTTCTCAGATTTAGTCCAGGGAATTGGGATCCAGAGTTTATCTGAAACCTCTGAAAATTCCACAAATTCAAACTGAATTTGCAAACTGAAACTTTCCAAGTATCTACAAATTCTCATAGCCTAGGCCTGGGAAGCCTGGCATTTGGCTCTTAGAGGAATATTAAAGCTTAGTTTGGGCATTAGAGTAGTGCTTTGGAACATCTAGTGATTATTTGTCCATGGGCAAAGAGAAAGTTTCAAAGAGAGAGCACCTACCAAAGTTTCTCTCTCAGAAGGCCTTTTGTTCTTTGAAAGACAACAGGTATCTTTCTACCCTGTTTTTATTCTCAACACATGGAATTTGAGGGTGAAAAGGACTTATGTAGCTCTTCCTCAATATAGAAGTTCCCCAGTTTCCCTGGACATTCTTTTCTTATCCCTTTAGTTACTGGCAAAGAATGTAAACCGTGACAGGCCTGAGATGAGGCTAAAATACAGCATTAGAAAGTGTCTTTCCTGCATAATCATAGTCATGGTTTTATCTTAAATCTGGCAGGTTTTTCTTGGTATACTGAGAGGATTTTCTGAAGATCCCAGATATCCAGGAAAAAGAGTTAAAAGAACATATTCATCAGTTCCCCTGTAGATGAGAAGCATGTGACAGATTACCAAATAGGTTTTAATAGACAGTAGTTATTTAGGACAGAGAAGGCGATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATGCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACACGACTGAGCGACTTCACTTCCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGTTATTTAGGATCTAGAGCTCCCTAATTTTTATGTTAAGTCATCTAATGTGATACTTTACAGTCACACATAATAATTGATAAAATGGGTAACTTAAATTTCTATTCTTATGTTAG
Seq C2 exon
GTTTCGAGGCTGGATTTGAGAATGAAGAGAATCTAAAACGGGATATTTCTGAGGAAGTACAACTACATAAGACATTACTTGCAAGGTCTGAAAGGAAAATTCCCCGGCATCTTAATCAAAGTAAAAGCAATGAGAGTGAATGCAGATCTGGAAGACAGTGGGAAAACACGCTGGGAGAGAAAAAAGGAAAACCAACATTCCCTGAAAGTTTAGGTAAGGTCCCAAGTCATCAGAGACCTTACTTGGGAGAGAGACCCTATAAATATCTGAGATACAGCAAAAGCTTTGGTCCAAACTCCCACCCTATGCATCAGCTAGCCCATCAAGTGGAAAATCCATATAAATGTGCCGATTGCGGGAAAAGCTTCAGTCGGAGTGCTCGCCTCATTAGACACCGGAGGATCCACACTGGAGAGAAACCTTATCAATGTCTTGACTGTGGGAAAAGTTTCCGTGACAGCTCCAATTTCATCACCCACAGAAGAATCCACACAGGAGAGAAACCATATGAGTGTGGTGAGTGTGGAAAACGCTTCAATCAGAGCTCAAGCCTTATCATTCACCAGAGAACCCACACAGGAGAAAAGCCCTATCAGTGTGAAGAGTGCGGGAAGAGTTTCAATAACAGCTCTCATTTCAGTGCACATCGGAGGATACACACAGGAGAGAGACCCCACGTGTGTCCCGACTGTGGGAAGAGCTTCAGCAAGAGTTCTGACTTACGTGCACACCACAGAACCCACACTGGAGAGAAGCCCTACGGGTGTCAAGACTGTGGCAAGTGCTTCAGTAAAAGTTCTGCTCTTAACAAGCACCGAGAGATCCACACACGAGAGAAACTTCTGTCACAGCCAGCACCTAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014478:ENSBTAT00000019251:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.465
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=54.8)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF097235=Zn-ribbon_8=WD(100=14.5),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]