MmuINT0180859 @ mm10
Intron Retention
Gene
ENSMUSG00000050619 | Zscan29
Description
zinc finger SCAN domains 29 [Source:MGI Symbol;Acc:MGI:2139317]
Coordinates
chr2:121158273-121164202:-
Coord C1 exon
chr2:121163747-121164202
Coord A exon
chr2:121161550-121163746
Coord C2 exon
chr2:121158273-121161549
Length
2197 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
AAATTGTGTTCTTGTATTAGGTT
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTGTACACTGGGGCTATGAAGAAACCAAGACTTACCTTGCAATTCTCAGTGAGACTCAGTTCTACGAAGCCCTCCAAAACTGTCACCGCAACAGCCAGTTATATGGAACAGTTGCTGAGAGACTGTGGGAATATGGCTTCCTTAGAACCCCAGAGCAATGTCGTACCAAATTTAAAAGCCTACAAACCAGCTATCGGAAAGTCAAGAATGGCCAAGCACTAGAAACCTGCCCCTTCTTTGAAGAAATGGATGCTTTAGTGAGTGCCCAAGTTGCTGCCCCACCTAGTGATGACCAGGAGAAAGAAACAGTTTCTTGTTGCCTCCAGAGAACCAGTGAGGCTGAACCTGAGAAGCAAGATGAGGACACAGAAGAAGATTCAGATGATGAAGATGATACTGAAATACCTCCAGAGGCTGTTATAACCCGTGCCCCAGTCTTATTCCAGAGCCCCAGTG
Seq A exon
GTAAGGTTCTTTATTTCTGTTTTTTGAGACGGGTTTTTTATTTTGGTTTGGTTTTAGCTGAGATTTCCCTTGAACGCTGAATACCCAAGGATGTCTGCCTCTACTTTCTAAATGGTGGTATTACAGGTGTGTGCTTCCATGCCCAACTAAGAGTCTTTCAGTTCTCATAGTATAAGTAGCAAAAGAGATGCTATAGAAATTAGGTGAAAAACCTTGAAATTGAGAGCTGGCCACTATACCGAGCTCTTCTGAGTTCTTATCTTTCTTCCTATGTTTCCTATCTATTAAAACAGCTCAGTGAGAAGATGCAAATTATTAATGTGGCATCCTTCATTACACTACAATATCACTTGAGATAGTTGCAAACTTTGTAGATTTACTGTTATTTTCATGTGATGCTAAAGTGATTTAGTGCAAGTAACTTAAGCCCTAAATTTGTTAAGCATTAAGACCTTGGGCTGGAGGTATAGTTTAGTGGTAGACTGCTTGCTTGCTCAACATGCCCCAGGCTCTGGTTAATCATTCCCATTGCAAATAAAACAAAAACTACATTACAAGGTTGATGTAACTGTGTGACTGAGGTACTATGTGAAGTATCCACCACAGTGCTAGGCACATAGTAGGTATTCAATAAATAATAATTATCACTTCCATAAGTCTTTAAATCAGCATTCTGATGTTACATTGAATGTTAATATTTTACTAAAAATGTTGACTTCTGGGCTTGGGAAATGTTAAATAATCCTTTTGGAGGTGCACATATTAAAGATTCTAAGATCTCAATGAGTCCAGCAAATCTCTATTTTTATGTCCCACCTTAGTGTTAATCTTCTAGGAAATTCATACACCAGCTGACACTCAGTATTCCTTTGCTTGTAGATTTAGTCTAAGGAATTCAAGAGCCAAAGCTAACCTGAAACCTGTAAATGAGTGTAACTTTTCATAGTTTAGGATGAAAGGCTGGCATTTGCTTTTTAGAATGTTAAAAAAGCTGCCTAGTTGGGCTAATGTTTTTTGCAACATTTAGGTTTTAGAGAATGTCTAAAGATGCTTTTCTTTTGAGGTTCTTTGTTCTTTAACAGATGCTAAGTACTTTTTTTCTTCCCTGTTTTTTGCCTCCTTTAGCATGCACTGGAATGTGAGGGGGAGGGGACTTACCAAAAACTACTTCTGGATATAGAAAATTTCCAGGAGATGTTCCTGAGTGTTTCCTTTTAATTCCTTTAATCACTGCCAGTGGACAAGACCACAGTAATCCCGAGAGGCAGGAGAATGACAATGTGGAAAGTGTCTTTCTGTAAACCCTTCTTGCTGTTGTGAGTTTTTCTGCAGATACTGGATACTCAGAAAGGGTTGAACAGTAACAAGCTTCTACATAGGCTATGTAGATGAAAGGCTTGTGACAGATCCAACACAGGGAAGAAAAACACTAGAATTTTAATATAATCGTAATTTGGGTATAAGAGCTTTTCTATTTTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAGACAGGGTCTCTCATTATGCAGCCTTGGCTGGCTTGGAACTTGCTTTGTAGACCAGGCTGGCTTCAAATTCATAGAGATCAATCTGCCTGCCTCTTTTTCCCAAGTGCTAGGATTAAAGGTTTATGCCACCAATCCCAGTTTATGTCGTGCATGTGTGAGCTGTGTACATATGGATACAGTGTCCAAGAAAGCCAGAGGCGTCAGAGTTGCAGTCACTGGAGCTGGAGTTACAGTCACTGGAGCTGGAGTTACAGGTTGCTGTGAGCCCTTCTGATATTAGTGCCAGAAACTGAACTCAGGTCCTTTGCAAAAGCAGTATGTCCTTGACCTCTGAGCCATTTCTCTAGCATCTCCCATGTTGCTAATTTAGGGGGCACATATGTCATGGCACATGTCTGAAGGATAATTCATGGAACTGGTTCTTTCATTCCCTCGTGTGGGTTCCAGGAATTGAACTCATGTCATCAGACTGAGCAGCCAGCACCTTTACCTGCTAATCCATTTCCCACCCGCTACCCCAACATATGTTATGAATTCAAAACGTGGAACTCACTGACCATTTATCTGTAATCCTCTAAGGTAGTACTTGTTTCTCCCAGCTTTGCTTTGTTGTGGTACATTTGTTAGGGAAATGAATAACTTTTCAAATTGTGTTCTTGTATTAG
Seq C2 exon
GTTTCGAGGCTGGATTTGAAAATGAAGAAAATTCAAAACGGGATATTTCTGAGGAAGTACAGCTGCATAGAACATTACTTGCAAGGTCTGAAAGGAAAATTTCCCATCATGTTAATCAAAGTAAAGCGAGTAAGAATAAATGCTCATCAGAAAGCCAGTGGGAAAAGACTCAAAGAGAGGAACAAAGACAACTAGCATTCCCAGAGAAGAATATAGGTAAAGTCCTGACCTATCAGAGGCCAGGCTTGGAAGACAGACCTTATAAATATGTCAAGTATGGCAAAAGCTCTGGTTCAAACTCCCATCTCAGGTATCCGGTCTCCCATGAGGTAGAGAACCCATATAAATGTGCTGACTGTGGGAAAAGCTTCAGTCGGAGTGCACGCCTCATCAGACACCAAAGAATCCACACCGGAGAAAAACCGTATAAGTGTCTTGACTGTGGGAAAGGTTTCCGTGACAGTTCCAATTTCATTACCCATCGGAGAATCCACACAGGAGAAAAACCGTATCAGTGTGATGAATGTGGAAAACGCTTCAACCAGAGCTCAAGCCTTATAATTCACCAGAGAACCCACACAGGAGAAAAGCCTTATCAGTGTGAAGAGTGTGGGAAAAGCTTCAATAACAGTTCTCATTTCAATGCACACAGGAGGATACACACAGGAGAGAGACCCCATGTGTGTCCTGACTGTGGTAAGAGTTTTAGTAAGAGTTCTGACTTGCATGCACATCACAGAACCCACACAGGAAAGAAACCTTATGGGTGCCATGACTGTGGCAAGTGCTTCAGTAAGAGCTCTGCCCTTAGTAAACACCGAGAGACTCATACTCGAGAAAAGCTGCTGTCATAGTCAGTGCTTAAGCCAGCCCCTGAGGAAGGGCCTTGGAAACTGTAGCACTTGCGAAGTCCTTTCCTGCTTTGTGCCCAGCTGGCCTAGGAAGCACTCCTCAGGATTTTTTACCACTTTATTTCTTGTGCTTCCCAGATCTAGATGAGGCCAATGGCATCAGCTTCAAGATTAAAAAGTAGATTTTGGTCTGACCTGATGGTAATCCCTCTCCCCTCTCGGTGCCTGTGTTGTTCCCTGAGAGAAGATATGGTAGTATATGCTGAGAGAAGATATGGTGGTATATGCTGTGGATCTCACCTGTATCCTTCACTCACACCGTCATTCAGTGCACGTCAATTGGAAAACCTGTTTCAGCAGTTTTTCAAGAAGCTGTGAGACTTGGGCCATTTCGCTCACTTAAACCTGTATATACTCTTCATTTATCTTTAAAGAGTTTAAAGTCCATCGTGGTTCTATCTTTTCCCAAGAATCTGGAGCTGGGGATCTATCTAGCTCAGTGGTAGAGCACTTGCCTAGTATGCACAAGGCCTTGGGTTCAAACCTCAGACAGAAGACAGACACACACACACACACACACACACACACACACACACACACACACACAAAACCTGTACATGTGAGGGGTGGGGACAGATAGAGTGAAACAATGTAAGTTTTCTATAAACACTGAATTTCTTAGTTTCTTCCAGAATCTACAAGGACTCTGGAAGTATATCCTACAATAGATTATACTGCATTTATAGCATCTTGATTTTTTTCCTTTCTTTTCCCTCCTTGCTGCCGCTGCCTCCTCCTCCTCCTCTCCATCTAAATTGCACCTGTCCCTTGTGGACTAGCAGTCAAAAGAGCAAACTAGAGATGTGGCGATAGAAAAAGCAGTTAAAGATGCCCACAGGAGTCATCTGTTTCTCCTACACTCCACACACCTAGTATAGAGTCATGCAGCCAATGGGTGCTCAGTACTAATTGCCATTTCCTCAAGTATAGGTAAAACACACTATACCCTAAATGACAAGGAAAGTGGTGATGCTACCAGTCTGTACACACACACACACACACACACACACACACACAACTATATATAAATAAGAGTATCTATTTAAGCACAAAATTACAAGTTTTTACAATCAATGGTATTGACTTAATTCCCACATATTCATAGATGTATGATAAAAGCCTTGTACAGTACAAGTGAAAACACCCTACTGTGTCCTTATACTGGAAAACAGTTAATACATAGACATAGGCACAAATATATAGTTGCAACATTTATTATTTCTTGAAAGGCAGGGTCTCACTACGTAGCCCTGGCGACCTGTAGCTTACTATGGAGATTTCACTGCCCTTGATCTCAGAGATCCGACTGCCTCAGTCTTCAAATTGCAAGTATAGAAGTACAGGTGTACATCACCATGAAAACTGGCAACTGGGTTAAAGACATTTACTAAGCCTAGTAGTGTTACTACACAAGACATACTCTTTAACATAACTTGCTCTGAGAAAAGTCTAGAAAGTCAGCATTCAAAGGAAGGAAAGTAACTGGGTAAATTGGAGTGGGGCAGACTGTCCAAAACTAGTTGTAAAACTGATGCTAGGTGGGTGAGAAATGGGAAAACAGTGAAGCAAAAGAGGAGAAAATATAAAGCTCACTAAAGCTTGAAGTAGGAAAAAACCTTAAGAATGCATGATAGAGCCGTAGAGTCTGCAGAGAATCAATTAGCAGAGACAGGGAAAGCTACAGGGAGACCCTGAGTTGTACTGAGCTGTGGATACTGCTGAGAGGAAAGCAGCATGGCTCTGGGAGGTGAGTTTAGGAGACTAGCTCCTTTGGGAGATAAACAGCAGAAATTACTGTCTATTGAAGATACTTTGATGAGCAGGTCAGAGAAAAGATGACCATGGCCAGATGGCCAAGACATGGAATAACTAATTTTCACATTTATTAAGATCTGAGATAGTAGCAAGGAGAAAGACTATCCTAAAATTTATTAGGATGAGTAATTAATTGTGGTTCTGGTACTGAGGAATTGTAAACAAAGAAGTAACATTAGCAATAAAGGGAAAATGGTATCTCAATTATGCTGCCTAAGCAAGCAAGAAGGTACAAGAAACCCCTGTCTAACGCAGGGCCTCAGGATCCGAGACGGCTTTGGAAGTGAACTGCAATGCCAAGGAAGATGAGATTATTGTGAACTGCAATGTCAAGGAAGATGAGATTATTATCTTTAGTATTAATCTGTCTATGTATAGTATTGTGGAAACAGGCATAAGGGTATTAGTAGACAGATGGTTCCAAATGTCTTGTATCTTAAACTGCTTCTGTTTCTCTTCCTATAAAGCAAAATAATGTTTATACCTAGTCTGCCTCTCAGGGATATCATGTTAATAAATGTTATGCCAATAAAGTGCTCTGTTTTTCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050619:ENSMUST00000110661:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=56.2)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF134651=zf-H2C2_2=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF097235=Zn-ribbon_8=WD(100=14.7),PF134651=zf-H2C2_2=WD(100=9.1),PF0009621=zf-C2H2=WD(100=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types