HsaINT0188831 @ hg19
Intron Retention
Gene
ENSG00000140265 | ZSCAN29
Description
zinc finger and SCAN domain containing 29 [Source:HGNC Symbol;Acc:26673]
Coordinates
chr15:43650370-43656580:-
Coord C1 exon
chr15:43656113-43656580
Coord A exon
chr15:43654140-43656112
Coord C2 exon
chr15:43650370-43654139
Length
1973 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
AAAATTCTGTTTTACATCAGGTT
3' ss Score
6.29
Exon sequences
Seq C1 exon
GTGTACACTGGGGCTATGAAGAGACCAAGACTTACCTTGCAATTCTTAGTGAGACCCAGTTTTATGAAGCCCTCCGGAACTGTCACCGCAACAGCCAGCTGTATGGAGCAGTGGCTGAGAGGTTATGGGAATATGGCTTTCTTAGGACCCCAGAACAGTGTCGGACCAAGTTTAAAAGCCTGCAAACCAGCTATCGGAAAGTTAAGAATGGCCAGGCACCAGAGACCTGTCCCTTCTTTGAAGAGATGGATGCTTTGGTGAGTGTCCGGGTTGCTGCCCCACCCAATGATGGCCAGGAAGAGACTGCTTCTTGCCCCGTCCAGGGGACCAGTGAGGCTGAAGCTCAGAAGCAAGCTGAGGAAGCAGACGAGGCCACAGAGGAAGATTCTGATGATGATGAAGAGGATACTGAGATACCCCCAGGGGCTGTCATAACCCGTGCTCCAGTGTTATTCCAAAGCCCCCGTG
Seq A exon
GTAAGATTATTTCACTATTATGGTATAAATAACAAAGGGAAGACAATGGGACTTAGGAAAAATATCATCTGATTGAGAACTGGCCTCTACACCCAGCTTTCATGGATTCTTCTTGTGACCACCCATATTTCTTGTCTATTAAAGCAGCTCACTGAGGGGATATAAATTATTTATGTGACTTGACTTCCCACACTAGAGCATCAATCTGAGATAGCTGCACATTGTAAATTTGCTGTGATTTATTCATGAACCACTAGGTTTCCAACCAGTTTACTAAGCAGGGAATCTGAAAGCTCACATTTCTCAAGTAGCATGTCACGTACCCACGGTAGGATGAAGTTGATTTTAAAAGTTCATTCTCTTTTATATGTCTTCTTCTAGTTTCAGCTCATATACCAGCTGTATGTCTGCTTTATTCACATTTATGAAAATCTGATAACTGTTGTTCACTTTTATGAATCTGAGGTTCCTGAGAGAACTGACCCTTTGAATCTTAGCTGCTAGATAAGAAAAAAATACTTCACAAGGGCTTCCATCCTTGTGAGAAGAGTTCTGATTTCAGAGTCATATATGTGTACGTATGTGAATCTGGGCTCTGTTGTTTATTAGTTAAGTGACTTAGAGAAGGTTACTTAAGGCTGGGCATGGTGGCACATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGGTCGGGAGTTGGAAAGCAGCCTGACCAACACGGCGAAACCCCATCTCTATTAAAAATACAAAAAATTAGCCAGGGGTGGTAGCGCGCACCTGTAATCCCAGCTACTTGGGTGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCCTGCCTGGGCAACGAATGAAAAAAAAAAAAAAGTTACTTAACCCCCAAGTTTGCTTATATATTAAGACCTACCTCATAGGGTTGATGTAAATGAGGTACTGTGCACAGTGCCTGGCACATAGTAGCCATTTAATAATAGTTTTCATTTTCATAAGTCTTTAAGATCAGCATTTTTTAATGTTGTTCCCTGGAATATCAATTCCATGGGGTATTAATATATTCTACTAAAAAATAACTTATAGGTTTGGGAAGATGGTAAATACCCCTGTTGGAGGCTCACAATACATATTCACATATTTAAGGTTCTAAGATTTATTTAATCTAGTGAATATTTCATGAAATATCTCATAAGACTAGGCTTCTGGGTAGAAATACTGTCTCAGGAGGTACAAACATGGGCTGATACTCAACATGCTTTTACTCCTAGATTTAGTCTAGGGAATATGGGATTCAGAGTTTACCTGAAATAGCTGAATAAATGCAAATTTGCATAGCCTAGGCCCAAAAAAGCCAGGCATTTGGTTCTTAGGGCCTTTTGGTTCTTTGAAAGACACTACATATTTTTCTATCCTGTTTTTACTTGCAACGTATATTGGAATGTGAGGGGAAGGGGACTCATGAAGCTCCTCTGGATATAAAAGTTTCCAAAAATGTTTTCCTGAGCATGTCCTTCTAAACCTTTTAGTTACTGGTGAAGAACATGAATAAGAATACTATGACAGACCCGAGATGTGGCAAAAATACGTATTAGAAAGTGTCTTTCCTGTAGAAACATGGAAATTATTTTATCTAAAACCTGGTGATTTTCCATGCTGTACTGGGAGGATTTTCCAAAGATCCTAGATGACCAAGAGGAATTAAAAGTATATATTATTCAGACCCTATGTAGATGAGAAGCACATGATAGGTTAACAAGTAGAGAAGTAAAACATTGGGATTTTAATAAGATAATGGTAGTTATTTGGGATCTAGGGCTCCCTAAATTTTAATCATGTGGTGTAATGCTTGTTTTTCCCAAGTTTTACATTCCTGTGGCACATATGATTAAGAAAATAGATAACTTCTAAAATTCTGTTTTACATCAG
Seq C2 exon
GTTTTGAAGCTGGATTTGAGAATGAAGATAATTCAAAACGGGATATTTCTGAGGAAGTACAACTGCATAGGACATTACTTGCAAGATCTGAAAGGAAAATTCCCCGGTATCTTCATCAGGGTAAAGGCAATGAGAGTGACTGTAGATCAGGAAGACAGTGGGCAAAGACCTCAGGGGAGAAAAGAGGAAAACTGACACTCCCGGAGAAGAGCTTAAGTGAAGTCCTAAGTCAACAGAGACCTTGCTTGGGAGAGAGACCCTATAAATATCTCAAATACAGCAAAAGCTTTGGTCCAAACTCCCTTCTCATGCATCAGGTATCCCACCAGGTGGAAAATCCATATAAATGTGCTGATTGTGGGAAAAGCTTCAGTCGGAGTGCACGACTCATTAGACACCGGAGAATCCACACTGGAGAGAAACCTTATAAATGTCTTGACTGTGGAAAAAGTTTCCGTGACAGTTCAAATTTCATCACCCATAGGAGAATCCACACAGGAGAGAAACCTTATCAATGTGGTGAGTGTGGGAAATGCTTCAATCAGAGCTCAAGCCTTATCATTCACCAGAGAACCCACACAGGAGAAAAGCCCTATCAATGTGAAGAGTGTGGAAAAAGCTTCAATAACAGTTCTCATTTTAGTGCACATCGGAGGATACACACAGGAGAGAGACCCCATGTGTGTCCTGACTGTGGAAAGAGTTTCAGTAAGAGTTCTGACTTACGTGCACATCATAGAACCCACACAGGAGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAATAAGCACGGAGAAATCCATGCACGGGAAAAGCTTCTGACACAGTCAGCTCCCAAGTAAGCCCCTGAGGATATATAACGGAAAGAGGCTCAATAAATGTATTGTTTAGAAAGTCTTCCAATAGTGAGATTCATCTACTATTCTGTGTCCAGTTAGCTTAGGAAATTCACTTTAGGATTTATGCCACTGTTTGTTCCTTGTTTTTCCTGATCTAGACTCAAATCCCCAAGGCAGTCTAAAGAATGAAAGGAAGATTTCAGTCCCTCTCTTTGCCTGCATCTGAATTGATGGATAACATCTTTTCCCTCTCAGTGCCTATGGTGTTCCCTTAATATAAGCACAGAGGACAAGGTAATAGATCCTATGAATTTGATAAGCATCCTTCTTTACTCATTCTGTCATTCAGCTGCATTTTGACAGGAAAAACCCATTACATTTCGAGAAGAAGTTATGAGACTTTGCCCATTAGGTGGGTCTAGCTCTTTTTTTTTTTTTTGGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCTGCTTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTGGCTGGAATTACAAGCATGCGCCACCATGCCCAGCTAATTTTATATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGGCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCGGGCTTTTTTTTTTCGAGATGGAGTCTCACTCTGTCGTCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTTCTGGGTTCAAACAATTTTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGCCACCTGCCACCATACCAGGCTAAATTTTGCATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTTTTGAATTGACCTCATGATCTGCCTGCCTAGGTCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCCAGCTCTTCTTTATACAATAATGGAAATGCTAAAATGAATGACTCTTCCTGCTCACTTAAACCTGTGCTCAAAATGACATATTTGTCAGGCACCCTCTTCATTTACCTTAAAGAAGGAGAGTTTAATGTCCATCTTGGTTCTGCCCTATGAATCATCTTGTCAAGAACAGGTGTTCTTATGCAGAAACAATGAAAACCTTATACTGAAGTGTGAACCCTGGATTTCTTAGTTTCTTCTGAGTCCTAGAAGAAGGGTTGGAATAGAATAATACATTTACAGGATTTAGGTTGGTTTTCTTTCTGTCCAGTCTCATCTGAATTTCGTCTGTCTCTTGTGGTCCAGAAGTTCCACAGAGCAACGCAGCTGCATGTGGTGACAGGTAGAGCAGTTAAAGCTGCCAATAGGAACTCGTCCATATTCCACACACCTGGTATAGTGTTATGCCCTCCATGGGCACTTACCTGCAATAAGCAGAAGCCACTGCCACATTCCCGTGTATTGGGAAAATGGACTACTGTGTGCGAACAGGCCCTTTACCCTAATGGCAGGGAAGATGGATTATCTTTGGCCAGTGGAGCTGCCAATCTAGACATACACATTCAACTGAATACAATTAAAAGCAGTTCTTTAAATGCAAATATAATTACTCATCTTTATAATACAATAGTATTAACTGCCCATATGCTCATAGTATGATGAGCCCTGTATAGCACAAGGTCAACAGGTCCTCTCCTTGTCCTTACAATCTAAAGCAGATGACACTGACATGGACAAACAAGTGCACATGCATAGTTGCGGCAGTTTTAGAGAAATCTAGAAAGCTAGGTAGCAACACTATGCATAAATGTTGTGGTCCAATGCATTAGTTTGCTTTAACAAAAATCTGGGAGGTATTTTTTCTCTTTATTCAGGAAGGCTTCATGAAGCAGGAAGTGGTCAAAGGAGGGAAGGTTACTGGTTAAATTATGATAGGAAGAACTTTCCATAACTAGTTGCAAAATTGAGTGCTGGGTGGGTTGAGGAATGGGAAAAAGGGGGAGCAAGGTGTTTTGTGTAGATGGAACAAAGGGCAAAGGATAGACTGTAAGGAAGGCCAGATAAAGCTTGGAGTAGCATGAGAACTTGAGGAATAGTATGATATGGGCTGTGCAGCAGGCAGAGAGAATCACCTTAGCTGAAACATGGGTGTTAGGAGCAGACCATGAGGTGGTAGAACCATCATCTATAGTAAATCAGGTACTACGCTATAACTATTGATAAGGAAACAGCTGACTGCCACTGAAAGAATAAGCAGTTTTAGGGGACTAGCTCCTATGGGAGATAAAGGTCAGAAATCGTAGTATCTGATGAAGATATTTTGATGAGCAGGTGAGAAGAAAGATAAACATGGCCAGATGGCCAAGGACTGGGATAAGTAGCCGTTTCACATTCAATTAGAATTCTGTGGCTGGAATAAGATCAGGGAGAGCAGTAGGAAGATATAGTATTCTATAATTCATAGCTTGTTGTGTTAGAGATTAATTAGGATTCTGCTGTTGAATCTTAGTACAAAAAAATCTAATATTTATTAGGAATTAAGGGAAGATGGTACTTCTGTTATGTTGCCTAAGCAGACAGGAAGCTACAAGAAACACCAGTCTGAAGCAGTGCCTCAGGATCTCAGATGATTTAGGAAGTGTGCTGTAATGTCAAAAAAAAAAAAAAGTATTGTCTTTAGTATATCTATGTATAGTCTCGTGGGAAAAGCATTGGTTGTGGTATCAACAGATATTCTGGTTCCAGATGTCTTGTAAGTTAACCTGCCTCCATTTCCCTTTCTGTAAAGCAAAATAATGTTTACACCTAATCTGTCTCTCAGGGATACCATATTAATAAAAATCATGTCTATAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140265-ZSCAN29:NM_152455:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=NA C2=0.324
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=54.8),PF045208=Senescence_reg=WD(100=91.1)
A:
NA
C2:
PF045208=Senescence_reg=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF097235=Zn-ribbon_8=WD(100=14.5),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACTGCTTCTTGCCCC
R:
CTGAGGTCTTTGCCCACTGTC
Band lengths:
346-2319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)