DmeALTA0006330-2/4 @ dm6
Alternative 3'ss
Gene
FBgn0020621 | Pkn
Description
The gene Protein kinase N is referred to in FlyBase by the symbol DmelPkn (CG2049, FBgn0020621). It is a protein_coding_gene from Dmel. It has 17 annotated transcripts and 17 polypeptides (14 unique). Gene sequence location is 2R:9252310..9285097. Its molecular function is described by: protein serine/threonine kinase activity; protein kinase activity; ATP binding; protein binding; GTP-Rho binding. It is involved in the biological process described with 9 unique terms, many of which group under: cellular component organization; regulation of wound healing; localization; cell division; post-embryonic animal organ development. 65 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; array of sensillum rows; non-connected developing system; adult head; intracellular non-membrane-bounded organelle. The phenotypic classes of alleles include: female semi-sterile; some die during larval stage; increased mortality; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages.
Coordinates
chr2R:9257410-9260144:-
Coord C1 exon
chr2R:9258840-9260144
Coord A exon
chr2R:9257674-9257679
Coord C2 exon
chr2R:9257410-9257673
Length
6 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CAAACCACAACGAATTTCAGTTG
3' ss Score
-0.11
Exon sequences
Seq C1 exon
GCCTGCTTAAGCGGAATGCTCCTAACCATGTGCACATGGGATCGGCAGGATCAGGATCTTCTCTAACCGGTAGCTCGCCTATGGTGGTTGGTGGGTCTCGCGACTCTGAGTCTCCGATTTCGAGGACTCCCTCATCCGACGCACTGGTGGAACCGGAGCCCTACACGCCCGGAGAGCAGGCACAGAACTTGGAATTCGATCCCGATGCAGGAATTAATGAACACGTGGAGACGCCAGGTGAATACCCGGATCCGGCGGCCAGTGGTCTGAGCGGAATGCGACCCCTGTCCATGCACATGCAGGGAATTAGTGTGCTGCCCCCGGAATCGCCACCCGTGGCCACCGGAGCAGCTGGTCGGCCCAATACGCTCAGCTTACAGATGCCGGGTGCCAGTAAAGGACAGGTGATCCAAGGCGGACGGACTGCGGCGCCTACAACGGCGCCACCGCCACCACCTGTGCTCAAGGCGACATCCACCACTCCGATATTGGATCAGGAG
Seq A exon
TTGCAG
Seq C2 exon
CCGCAGCCACCACATCCCGCCCAGAAACCGACGAATCCCGAACCACCGTCCGCTGTGGAACAGCAGCTGCACCGTCCGGTCCTAATCCTGCCGCCCGTGGTGCTCCTGGGTGGTCGGGAGGAGGACCGTTCGGTGCCACCATCGCCACTAGTCGAGTATCCCGAGGACGACGACGAGTATCTGTATCGTGGTAGCAACGAAAACCTGGGCACCAGGCTGCACTCCAGCCACAGTTCCAGTGCCGGCGATCGTTTCTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0020621-28-20,28-19,28-18,28-17-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(36.8=6.4),PF0218511=HR1=PD(43.2=7.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0308401

Main Skipping Isoform:
FBpp0111810

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0087683, FBpp0087685, FBpp0308399, FBpp0308402
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACCTGTGCTCAAGGC
R:
GTTCGGGATTCGTCGGTTTCT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)