DmeALTA0008929-1/2 @ dm6
Alternative 3'ss
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16483678-16486584:-
Coord C1 exon
chrX:16486380-16486584
Coord A exon
NA
Coord C2 exon
chrX:16483678-16483859
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTGTCGTTGTATATCTGCAGAGC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTACTTAACCTTTTCTTAGCCTTGCTTTTGTCCAATTTTGGCTCATCTAGCTTATCAGCGCCGACTGCCGATAACGATACGAATAAAATAGCCGAGGCCTTCAATCGAATTGGCCGATTTAAAAGTTGGGTTAAGCGTAATATTGCTGATTGTTTCAAGTTAATACGTAACAAATTGACAAATCAAATAAGTGATCAACCATCAG
Seq A exon
NA
Seq C2 exon
AGCATGGTGACAACGAACTGGAGCTGGGCCACGACGAGATCCTCGCCGACGGCCTCATCAAGAAGGGGATCAAGGAGCAGACGCAACTGGAGGTGGCCATCGGGGATGGCATGGAATTCACGATACACGGCGACATGAAGAACAACAAGCCGAAGAAATCCAAATATCTAAATAACGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-30-33,30-32-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.3=11.6),PF065128=Na_trans_assoc=PU(17.3=65.2)
A:
NA
C2:
PF065128=Na_trans_assoc=FE(23.1=100)
Main Inclusion Isoform:
FBpp0292691
Main Skipping Isoform:
FBpp0292707
Other Inclusion Isoforms:
FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292696, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292704, FBpp0292708, FBpp0292712, FBpp0292723, FBpp0311217
Other Skipping Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292695, FBpp0292697, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292705, FBpp0292706, FBpp0292709, FBpp0292710, FBpp0292713, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0303597, FBpp0309614
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGATTTAAAAGTTGGGT
R:
GCTCCAGTTCGTTGTCACCAT
Band lengths:
119-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)