DmeALTD0008740-2/2 @ dm6
Alternative 5'ss
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16483678-16486534:-
Coord C1 exon
chrX:16486380-16486534
Coord A exon
chrX:16486341-16486379
Coord C2 exon
chrX:16483678-16483859
Length
39 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
3' ss Seq
TTGTCGTTGTATATCTGCAGAGC
3' ss Score
7.95
Exon sequences
Seq C1 exon
CTTATCAGCGCCGACTGCCGATAACGATACGAATAAAATAGCCGAGGCCTTCAATCGAATTGGCCGATTTAAAAGTTGGGTTAAGCGTAATATTGCTGATTGTTTCAAGTTAATACGTAACAAATTGACAAATCAAATAAGTGATCAACCATCAG
Seq A exon
GTGAGAGGACCAACCAGATCAGTTGGATTTGGAGCGAAG
Seq C2 exon
AGCATGGTGACAACGAACTGGAGCTGGGCCACGACGAGATCCTCGCCGACGGCCTCATCAAGAAGGGGATCAAGGAGCAGACGCAACTGGAGGTGGCCATCGGGGATGGCATGGAATTCACGATACACGGCGACATGAAGAACAACAAGCCGAAGAAATCCAAATATCTAAATAACGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-30-33,31-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.408
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.3=11.6),PF065128=Na_trans_assoc=PU(17.3=65.2)
A:
NA
C2:
PF065128=Na_trans_assoc=FE(27.1=100)
Main Inclusion Isoform:
FBpp0292692
Main Skipping Isoform:
FBpp0292691
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292686, FBpp0292690, FBpp0292693, FBpp0292699, FBpp0292700, FBpp0292708, FBpp0292712, FBpp0292713, FBpp0303597, FBpp0309614
Other Skipping Isoforms:
FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292684, FBpp0292685, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292709, FBpp0292710, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0311217
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCGATTTAAAAGTTGGGT
R:
GCTCCAGTTCGTTGTCACCAT
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)