DmeEX0002679 @ dm6
Exon Skipping
Gene
FBgn0266354 | CG45002
Description
This gene is referred to in FlyBase by the symbol DmelCG45002 (FBgn0266354). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is X:16969069..17066732. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 14 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:16976335-16987066:-
Coord C1 exon
chrX:16986849-16987066
Coord A exon
chrX:16983518-16983644
Coord C2 exon
chrX:16976335-16976548
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGATAATAATCGGCCACAGCTT
3' ss Score
2.62
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGTCGTCGTTTGACTTCCGCACGGAAGCGTTCGCTCTCTCGCGTTCGTCCCTCTCACTCTTTCCGTCTTCAACTCTCTCTATTGTTGTTATTATTTTGATATTCGCTGGCCATTTTTTCGCTCAGTGTAGGCCAGGAAAATGTAATCAACTCGAAGAACAAGACCGCAAAAAAAGCGCACAGAGGGAATATATTGTGACAAGAAATCATCCATTAAAG
Seq A exon
CTTCATCATGGTGGAGATACAAAAGCCGCACTCGGCCCTAAAACGACCATCGCTGAAACGGGAAACGGTCGTTGTTAACAACAGTGCGCCGACCATCAAAAAGGTGACTCTGGTGCCCAAGGACGAG
Seq C2 exon
GAACTGGTGGCCATTTCCCCGGAACGCCGCAACTGGCGTGGCATCTTCATCGCCCTGCTGGTCATCGCTGCCGTTTTTAGCCTGATCATATTCTCGATCTTCCTGCTGTCGCCGGAGGATGAGGGTCTACGGATCCGGGGTCGCCGGATGCTGCCCAGCGACATTCTGGGCAGAAGCCTCCAGTGGAAGCCCTTCAACGGCACCTGGAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266354-'15-12,'15-11,16-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0310523
Main Skipping Isoform:
FBpp0310525
Other Inclusion Isoforms:
FBpp0310522, FBpp0310526
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCCTCTCACTCTTTCCG
R:
TAAAAACGGCAGCGATGACCA
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)