DmeEX6002992 @ dm6
Exon Skipping
Gene
FBgn0266354 | CG45002
Description
This gene is referred to in FlyBase by the symbol DmelCG45002 (FBgn0266354). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is X:16969069..17066732. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 14 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:16976335-17049452:-
Coord C1 exon
chrX:17049353-17049452
Coord A exon
chrX:17014928-17015224
Coord C2 exon
chrX:16976335-16976548
Length
297 bp
Sequences
Splice sites
3' ss Seq
TCAAACGAACTTTAATACAGAGT
3' ss Score
2.32
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATACATTCTCAAGATGCAGACGAATGTGCAAATCGACTCGAAGAATCTGCGCAGCACCGATGACAATTTCCGTTCCCGTGGCCATCACATCACCATCGAG
Seq A exon
AGTGCAAAACGAACTCAAATTACACATAAATTTCAATTGGCAAAGTCGAAGTGAAGGCCGGCCTCAGGATTTATCGCCCGACGATAATAATTAAGGCGGCCAGCCGAACGTAGATACACTACGGCCCACAAATAGAGCAGCCCCGAACCGCAGATACTAACCGTTGGAGCAGCAGAAGCAAAACGAGATACATATCCAGATACAGATACAAGAAGAAAAGCCAGTATGAATGCCGCACAGAGCGGCGGCCACACGGGTGGCGGTGGTTCCATGGGCAAGAAGGGCTCCCAAATGGAG
Seq C2 exon
GAACTGGTGGCCATTTCCCCGGAACGCCGCAACTGGCGTGGCATCTTCATCGCCCTGCTGGTCATCGCTGCCGTTTTTAGCCTGATCATATTCTCGATCTTCCTGCTGTCGCCGGAGGATGAGGGTCTACGGATCCGGGGTCGCCGGATGCTGCCCAGCGACATTCTGGGCAGAAGCCTCCAGTGGAAGCCCTTCAACGGCACCTGGAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266354-'2-12,'2-6,13-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0310525
Main Skipping Isoform:
FBpp0310527
Other Inclusion Isoforms:
FBpp0310524
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGATGCAGACGAATGTGC
R:
GTTGAAGGGCTTCCACTGGAG
Band lengths:
292-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)