DmeEX0002680 @ dm6
Exon Skipping
Gene
FBgn0266354 | CG45002
Description
This gene is referred to in FlyBase by the symbol DmelCG45002 (FBgn0266354). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is X:16969069..17066732. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 14 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:16976335-17032705:-
Coord C1 exon
chrX:17032425-17032705
Coord A exon
chrX:17027393-17027398
Coord C2 exon
chrX:16976335-16976548
Length
6 bp
Sequences
Splice sites
3' ss Seq
TAAAAATATGAATCGAGCAGCAT
3' ss Score
-2.05
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TTTGCTGCAGCTTCTGTTAACCGCTCTGCCAAAACGACGACTGAGCACACGCCGTGTATAATAACAATAATAATAATAGTCGTAAAATAATAATAACCGCATATAACCATAACCGTCGCCCAATAGTACTGGGGCTCGAGTGAACCGATCGGGATACACATATTAAAACCATGTCGGTGGATTTGAGTGGACAGCAGGAGCCGACCATATCGGTGATAACCACTGTTCCGGTGGCCCAAAACGGTGGCGAAATGGACGCCCTGCTGCTCGGCAGGATTGGG
Seq A exon
CATTCG
Seq C2 exon
GAACTGGTGGCCATTTCCCCGGAACGCCGCAACTGGCGTGGCATCTTCATCGCCCTGCTGGTCATCGCTGCCGTTTTTAGCCTGATCATATTCTCGATCTTCCTGCTGTCGCCGGAGGATGAGGGTCTACGGATCCGGGGTCGCCGGATGCTGCCCAGCGACATTCTGGGCAGAAGCCTCCAGTGGAAGCCCTTCAACGGCACCTGGAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266354-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBtr0344096fB324
Main Skipping Isoform:
FBpp0310521
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACGGTGGCGAAATGGAC
R:
GATGAAGATGCCACGCCAGTT
Band lengths:
96-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)