DmeEX6018864 @ dm6

Exon Skipping

Gene

Description

The gene Alhambra is referred to in FlyBase by the symbol DmelAlh (CG1070, FBgn0261238). It is a protein_coding_gene from Dmel. It has 14 annotated transcripts and 14 polypeptides (13 unique). Gene sequence location is 3R:7094596..7124185. Its molecular function is described by: DNA-binding transcription factor activity. It is involved in the biological process described with: larval somatic muscle development; regulation of transcription, DNA-templated; haltere development; molting cycle, chitin-based cuticle; instar larval development. 88 alleles are reported. The phenotypes of these alleles manifest in: embryonic/larval somatic muscle; wing; larva; embryonic/larval nervous system; RP2 motor neuron. The phenotypic classes of alleles include: phenotype; fertile; courtship behavior defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, at stages throughout the pupal period, in adult female stages.

Coordinates

chr3R:7094596-7096820:-

Coord C1 exon

chr3R:7096292-7096820

Coord A exon

chr3R:7095580-7095843

Coord C2 exon

chr3R:7094596-7095515

Length

264 bp

Sequences

Splice sites

3' ss Seq

CCTTGACTTTTTACTTTCAGTCC

3' ss Score

8.29

5' ss Seq

GATGTAGGT

5' ss Score

4.9

Exon sequences

Seq C1 exon

ATGCTGGGAACAGCAACAGCAGCGTTTGGAGCTTAACTGCCAGTAGCACCGTCAACAGCAACAGTTTGCATCACCAACATTCATCGCAGCAGCAGCAGCAGCATCAGGCGCAACACCAGTCGCATCCGTTGCAGCAACAGCAGCAGCAGCAGCAACAAGTGCAACATCATCTGCATCAGTCGCACCACACCAGCGCTGCTGTGGCAGCCGCTCATATGCTTGGCGTGGGAATGAGCCTGGGCGCTGGAGGTGGTGCTGCCGGTGGAATTGGACGAGGTGGGTCAGCGACAGCCATGGCTGCAACAGCAGCAACAACCACAACTACTTTTACGACCACAGCGGGCACGGGCATGGGTCAGCAGCACCACCACCCACACCCACACCAACATCCTAGCATTCAGATTCAAGTGGGTGGCGGCGGCGTTGGCGTTGACGGTTTAAGTAGCACCTCCTCCTCCTATGCGGTGCACCACGCGGCTCTCTACAGCACGCATCATCAG

Seq A exon

TCCCAACTAAGGCGCGACGATAACCTCGCCAAAACTAGCTGAAAGTCGCACAGTGAGCAAGTCCTTCAGCAGCCGCAGCAACAGATAAAGTTAAAGAGAAAGCAGCAGTCACTGGCCAAACGAGGAGCCCGTCATAGCAGTACCAGTACCAGCAGCAGTAGCAGCAATCACGGCAGCAAAAAACTGCCCCAGCCCAGCAAATACAGCAAGCTAAGTGCGGCGGAGTCTAGCTTTCGGCAGCTGATCGACAAAAATGAAGATGAT

Seq C2 exon

CTCAGCAGCAATAGCAGCTCTTCGACCTTTTCATCCTCCTCCCAGCAGCAGTCGTCGGTGGACTACGAGGCGGAGGACGAGAACGAAGACAAGCAGCGCAGGCCGTTGCATAAGAACGACAACGACAGTTTGCTGCACGTTCAAAATTTCCTCAAGTGCTTCGGACCGAATGCTTATGCATCGACCAAACCATCAACACCCACTCCAGCAATCGCATCAAAACCTCTAGCCATCGTTAAGTCCTCTGCCGGAGGGCAACTGCGTGCCTGGCGCCAGAATTATAGCTCTCCAATTAATGGAGTTCAGGCCGCCACCTCAATAGCAACATTACAGGCGGCCCAGTCGACGACAGCCGTAGCGGAAAACACAAGCACCAGCACTGCCATGTTTCAAGCCCAGGCCAGTGCGAACCAAAAGCCAACCAAGTTTCAAATAAACACAAAGTTTTTGCGCAAACCACGCAACAAACTACTGAAAATGCTGCCGACAGCGGCAGCTCT

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0261238-'34-21,'34-19,37-21=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. Stop)

No structure available

Features