DmeINT0016920 @ dm6
Intron Retention
Gene
FBgn0020503 | CLIP-190
Description
The gene Cytoplasmic linker protein 190 is referred to in FlyBase by the symbol DmelCLIP-190 (CG5020, FBgn0020503). It is a protein_coding_gene from Dmel. It has 16 annotated transcripts and 16 polypeptides (15 unique). Gene sequence location is 2L:17384700..17409698. Its molecular function is described by: microtubule binding; myosin VI heavy chain binding; actin binding; protein binding; microtubule plus-end binding. It is involved in the biological process described with: nuclear migration; cytoplasmic microtubule organization; cellularization; establishment of mitotic spindle orientation. 21 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the pupal period, in adult male stages.
Coordinates
chr2L:17394430-17400551:+
Coord C1 exon
chr2L:17394430-17394492
Coord A exon
chr2L:17394493-17400395
Coord C2 exon
chr2L:17400396-17400551
Length
5903 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATTGCTTTCCCATCGAACAGATA
3' ss Score
6.94
Exon sequences
Seq C1 exon
AAGCCACCAGCATGAGTCGTGAAAGCGATGACAATTTAAGTTCGATCAATTCGGCTTATACAG
Seq A exon
GTAAATATGTTTTTACGTTTCACTTATATTTTTTCTTATGCATTCATTTGTTATTTTAACTTGGCTACTGCTCAATGCGTTTCATTTAATCTCTTCCCATGACATTATTAATTTACAATTAATATTCAATTAATTGCTTGTTGATGTGGGGGCGAAATTAACACATCTGTGCGAACACCTTTTTGGGCATAACATTAATCGTATCGGAATTTGATGAAAATTGCTTGCAAGACTTAACGACGTCATAACAATATCGATGAATTTTATATTTTATATAAACTAAACAATTTAAAACACATTAACACGTGAAAAATTCGAAACAGTACAGTATTCTGAAGAAAGTACCTATGAACGAGTTATACTTTTAGGCTAAAACGAACTGAATATATTATATTATATCTATAACCTAGTTGAAGCACACTTTATAAATGGAACTGTATACCTCTAGACATAATAATAATAATATATCTTATCAGACGTGTTTATTTATATCGACCCAGTAATCATTTCCTTTTAATTGACATTTCGAATACCTCAATGTAGTTTGTGTTAACCCTGAAAAACACACTGTTCCTTCCTCCCATCACTTTTGGTTCAGTGATCTCCCAACGAACAACAGGCATTTCATTGCCTTATCTACTTGTGTATGCAACATCTTCCCTCAGATAGTGAAAATGTCAAGTCAAGTCTCACGATCTCTGACAGCTCACAGATAGTATCTATTTACCAATCAAAGACATATCAAACCGTCAACCGTAATCAGTCATAATTTTAATCGTTTCTTACCTTAGCCGTAGGCCAACTTCATTAGGCTTAAGTCGTCTTTGTAGTTCCTGTGCTCATTGGAATGTTCATTCAACTGTTTGCCCTTCTGCCACATGTGTTTTTATTGTTTCGCATTCGAAACACGTTCTAAACTTAAACAAATTTTAATTGTAATGCGAAATACGCGACTCGACCAGACGCCCAACCGGATTTTTTTTTTTTTTGGGTATTTACTATATAGTATATGGTATACATCTATAATTAATAATATATGGGACACGCCTTTAAGCGATCAGCTCGATTAGCTCACGTAAGCATCTTCATCTGGAAAACCAGTTTTCTATTTGGTGAAATTCTAGTTTGTCGCACAAAGATTCCTGTTGAAAACATTTAGCATTTAAAGTAATGACAATTAAATATTCAGATATATGCATTGTCGATGCAATTATTGTGTGCCCAGAACAATGAGCAAAAATTAATTTAATTGAGATAAAAAATGTTAGAGCAGGCACAGTAGCCACATTTTAGCGCGAATGTATAACAATTGGAATATGTGAATACACTAATTTAAGATGCCAGGAAGTACAAAGATACAATCAGTGCTTTTAAGTAAATTACTTTCAGACACACCCCTGAATAAATGTTGTATTTATAAACGTGCTATATTTACCCAGATTGCTTCGCTCACTGTAAGCTTCACTGTAACCACTCGTGCAGTTCAGTGGAAATGTTAGTTCAGCCCACAGTGATCAGGACTTAGAGATCGCCAATCAGCAGCTAATAATCGGTTTTCGTCGGCATTTTCCACAGAGACTCGCAGATGGATTTGCATCTAACATGCCGAAAAGTCATGTAAGTCATGCGCAGTCCGAGTTGTGGGGTTGTGAAAAACTACTCGACATGTGGGTAGCCAAAGCTGCAGGAAAACTGGCAGAAATTGGTTAAAAAGCAGTAAAATATATATAAATATATATTTAGCTAGGAAATAAACTGAATTCAAAGAACATTCAGGCTTACCTTAAGGAAGCTTTAATAGATAGTTTTAGTTACAATTTTCAGCGTGAGTAGCAAACTTTTATTGCCGTGCAAAAACCCACATTATAGCCACTTACGAATCGCTCAGAACTGCATTGCAACCTACACAGGGAGCTATTATCGATGAGGATGGCGGTGCACGGAGCTGCACAGTTTAGTTTAATTAAATGTTGTTTAATCATCTCAGAAGATAATGTGCTATTGACATGACCAGCACTGTTGGCTCTGTTGGCTGATTTATCGCCGGTCAGCGCGCGATCGATCCGCCATAAATGGCTGGCGAAATATTTGTTTTCGATTTCAACGTATCTCCCTGGCTGCTTCATTTTGGCCAGAATCGTGAGCAAAGTGGGTCGCAGCCAGGCCCGGGTTGCCTTTTGGCCAAGTCAAGTCAACTATTGACGGCGCCACACTCCACTTGGCGTTGGCCGGGTGAGCGGTGCTCTTTGATGATTCATCTGTCAGATACATGAGTTCATTAGCAGCACTGACACTGAATGTCAACTGCAAGGAAATTGTTTGTCATCTAGGTGCGTGCGTATTTTTAGAATGACGACTTTTCACAGTTAAATGTTGCAAATTAAGTGCGGCGGGGGAAAGGTGTTTCAATTAGCGAAGGTAAAGTCAAGACTGATTTATTGCCTGGCATTGGTTGCTTGTTTTTCCAGCCATTACATAAAATACGAACACAGAACATCAAAGCCAGTGTTAAGTGAAAGTTTGCAAAATAATTGTTAAAAACAAAAAAGGGAACCACTCACCAAAATACACAACAACAAACTGTTACAACGCCCAATTGTGATAATTAAAAAAAAAAAGTTGTTACGAGCATGTAGGATACGGAAAATACTACCGTCATGATAATAGCAAATAATAACAAATTGTCTTGCACGATCGGCGAACGGTAGCGAATGCCAGCGTATATCTGTCAGATACAATATACTCACAATTGAACCTTGAAGCCGTCTGGTCTGGCCAACTCATGTCATGTCACGGCTGGGCCAACGCAATCGGTTGATTAGCCAAAAGCAGTGGCCCACGAGATATAAAGCCGGTACGAAGTCTTCTTCAACACACTCGTACTCAAGCAGAGCATATCTGGCGTAGATTACAAGTGAAGAAAAATTAAAAAAAAAAAGAAAAGGGGAAAATAAACGCAATTTCAACTGGCAAAAACACAATTAACTACACGACGTAGACACGCTGGGGTTTTCATAGCGCACAACTGAAGATGACGCTAGTGCACAGGAAAAAAAAATTGGAATTATTAAAGTTGAAATATAGTGAAATACCTTACTACATAGACATAATATAAAATTAAACTTTCATGTTATTAGTTTGCCAATTGCTTTTTTTTCTGTGCATTAAAAAGTAAGCGGAAACCGAGTTCGTGCAATTGATAAATTGAAATCTTTTCTCGATCTCCTTCCTTTTCGGCAGCATTTCTTTTGTCCGCTGCAATTGTGTTTTTAAATCCGCTGCTGTCTGTCATTCAATGGCTTTGAAAACGTTACCAAACTGTCGACAATTTAATTGATTTATGCTCTTATAGCTCTTTCTCGTGCAGTTTTGCCAAAAGTATGAATTGATTTTGAAAGTTGCTGTGAAAAGAGGCACAATAAGTTACACATCAATATCAATAAAGAATTGGACACAGACAATTTAGGGAAAGAAAGAAAGGGATTTTTAAGAGATTTTTACAATGGTTTATTTATTCCTAAAATGAATTTATGGCACGTCATGTTAGCTTTTTTCTCGTAATTTAAAATAAAAAACGTAAATTGAGGTAACTTTTTATTTGGAGAAATTTTATTAACGTGTTTTATAAAAATCATATAGCAAGCACACGCCAAACTCTTTCTCTCTACTCAAGCCATACTTATAGATACATACATATATTTCGAGCTTAATAACATCTCAGATTACCGTTCGCCTTTTTTTTGTGCTGGCATCTAACCTTTACCACAACTGCTTGCGGCCAAGATCTTATTAAAGACAAGAAACCTTAGCACACAAGCTGCCAAAAAACTTTCACAACCCAAAACAGCAAATTGGGCTTAACACAAATGCGCTAATTTTTAACCAATATTTATATATATCTATATATATATACATAATATACATATATAACAAAAGGGGAAATGTCAGGAAAAACTTGCTGCACAGCTTGCTCAGTTAACACCCACAAAACACAGCGAAATGCTAAACAATTGCAATGCATTTTATGGAAATTCGGGGCGACTTCGTGTAAAGATGTATATGTATGTACATTTTTGTATATCTACAAACCCGTCCTGTCTATAGATCTCTATCAAGAGACTGTCAGGCGCTTTACGCGATCTTCGCTCTCACCCACACCCGACTGGGATCGCTTTTCGCCCGCTAGACGCTCGCTAAAATCGGAGGCTGGAAGTCGCGCATCTTGTAAGTTATTAGCCCGCCATCGCCATTGTGCCAGTCGCATGTATCTTTAAATGGTATTTCGTATCTGTATCTGTATCTGTATATTTTCTGTTTGTTTGTTTTGCTTTCGTTACTGCTTGTTGTTTTCCAACGCCAAGATGATTATTATCTAGAAGCCACTGGGCGGCGTCGCAGCTCAGGTAAGCATTCGCTACGATTGTGAGTGGACATAAATGCAACGCACAGGATTTTGTAACGGGGGAACTTTGTGGCAAATCATGTTTTATAACTAATTTATTCTTTTTTTTTTTTTTTTGTTTACGTGTACTGCAAATATCTTTGCTGTGTCTTGTATCTGCAGAGCGTGTCTGGTTCTAGCCATTTGCGCAGGTGGCTGGCTTTTATGCATCTAGGCCAGTTGCTCGCTCCTTAAATAGTCATTCTGCAGAAACGTTAAGAGCGCAACTTTATGGCCAAACTGTCGAAATAATTCCCATGCAGATGGCATATATCTCGGCATCTTCGGTAGCTCCAAGTATTGTCAAACTAACAAGGCCTAATGAGCCACTGCAAACGTGTTTAAGTTTACCTCTCACTGTGGGCGTAATTGCGCCTCTAATGAGCCATTGCTGTGACAATATTTACACTGAATTAATGTATCAAGTCAAGGTCTTTATAGGGTTAACTATGCGCATTTTGTTTAATGGTTGCCAAATTAAATTGGCCAAGTTTGTAGATTAATGAATTTGGGGCAAAATCGTTACGCTTTTAATGCTAATCAAATTGATGAGGAAACGTAATCCGTGAAAAATATGAAAAATTATTTAAGTAAATGGGGAACATTTTGAACAAGATTTGCTTAGCTTATTACTTTTTGGGCTTATGTTAATTTTAGTGAAGGGATTTGATTGGGGAAAGGTAAATTAAGATAAAATATTGTCTATTAGTTATATATAAAGTAAAAAATGAATAGAATGGCACGTGTTTTGTAACACCCAGTTGTTTTGTTTTTCTTTTTAAATGTTAAACATGATATGCAATTGACATTTAAAATAAAACACCAATTTATTTTACATGAACTGAAGTGTAATGTCACTGAAATGCAGTTTGAGTTCATTTTCAGCAACGGCAATGGGAAAATTATGAGCAAGTTGCCATATCTAATAGATGTGGGTGGATGCAGTCAACAGCAAAATGAAATTAACTGACACGACAGCCAAACTTGGCAAAATGTTGTTATGACTTCACTGAGCTGCATGCAAGTTTTATTTAGCTTTTTAATCCGCTTGTTTCCTGTAATTTTCCACTTAATGGTTTTCCCTCAGACACAGTAAATATAAATGGGTAATTTAAAAGTGAAATCGGAGAGAATTCATTGCCACTTATAGCATAGAAGTGGAATATCGAACAGCTTGCAAATGTCAAGTTTACAATGCTAAAATCCGTCTAAATAATTTATATTCATTATGCGGGGGATCGTTCTCAATGGTTTTCCATTGAGCAGGCGATATGCAAATATGCCAAATGACATCATACCCAAGTGGAACACAGATAAAAAATGAACTGTATTGGAGAGATAAATGAAAACGCAGTCTAGCCAATTTTAGGATTTTTTTTTTAGACAGTATTTTGATTGATGACTTAACAGTTGATACTAATGGGACCCCCCAACTTGATATTATTGCTTTCCCATCGAACAG
Seq C2 exon
ATAACAGCAGCGCCGTGCTGACAGCAAACACAGAGCAGTTCATCATTGGACAGCGGGTTTGGCTGGGTGGCACTCGTCCCGGACAGATTGCCTTCATTGGAGACACACACTTTGCTGCTGGCGAATGGGCGGGTGTTGTCCTTGACGAGCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0020503:FBtr0080976:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0130220=CAP_GLY=PU(56.1=69.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0080529
Other Inclusion Isoforms:
FBpp0080530, FBpp0304725
Other Skipping Isoforms:
FBpp0080528, FBpp0288701, FBpp0288702, FBpp0290656, FBpp0290657, FBpp0304724, FBpp0304726, FBpp0304727, FBpp0304728, FBpp0308841
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)