DmeINT0035093 @ dm6
Intron Retention
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16475628-16477571:-
Coord C1 exon
chrX:16477449-16477571
Coord A exon
chrX:16475751-16477448
Coord C2 exon
chrX:16475628-16475750
Length
1698 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
AAAAACCAAACCAAATTCAGGTC
3' ss Score
3.16
Exon sequences
Seq C1 exon
GTATCGCTTATCAACTTCGTTGCTTCACTTGTTGGAGCTGGTGGTATTCAAGCCTTCAAGACTATGCGAACGTTAAGAGCACTGAGACCACTACGTGCCATGTCCCGTATGCAGGGCATGAGG
Seq A exon
GTACGTACTTTCCATACATACTCGTAACAACCCAATACCAAACCAATATCAAATCAAATCAAATCGAAACCAATTACCACAACAAAAAATACTTACCAACAAACAAACAAACAATTTCATCAATCAGTATCAGTATCAGTATCAGTAGCATATCGTATATCGTATCTCAATCCAGCAAATAGCGCCAAATCTCATCATAACTAATACTGGCGACTCCTTTACGCCGATACAACCTCTCTACTCGAACTCGTTAACACCAGCCATTCATTTCAAACTAACAGCAACCGATCCGAATTGTGTAGCTATAGAAATTGAAACGTGCATAGCTTTACAGTTAACCATTTGGATTGATGGGCTCATAACCATGATAATCTGCATCAGTGAAGCAGTTGAATTCATTTGTTGCATCCGTAATTTGTAAAACTTATGAAATTATCAACATAAATCGTAATTGATTGACTGATTAGATGCTAATTACCCAACAACTTACTCAAATCTCTCTCTCTCATCGATCAGCCGAACACAAAAACCACACTCCAAGTACTAGAGTTAATCTTAGCTATCGTTAATCGTTATTCTTACATACTTACTTATGCATATTGTTATAAATAATTAGACAACTGTTTTGCCTTGCCTTCTCTCACACACAAGTTGCGTCTTGCTCGATCTCTTTTTCGCTCTAGCTAGCTCGCTCTGTCTATCTCTCTCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTATTTTGACCTACTATCCACATCCTTTATTGATTGTCCACTCGGCTCACACTTAGAATATAATTGGCTCATCAGAACAAAGAAATTCGCTTAAACAGCTTAACCAATTGACGACTATCGGTCGAGTCCTATGCTTGCCAAGTACTGTAGAACCGATCGAACATTATAATTAGAATTATCATCGCCTTATGTACCAGCCACACAACTTTTGATTCTACTCGTACTTTGACCATCTCATCTAGTCACGTACTTAGTCTCTAGTTTAAGTTAACTCTTAGCTAATTTTGTCGCATATACTTAATAACTTCAAGTTGAACATGTGCTTGTTTGTTCGCAAATGAACCGTTATGCTGTTGCCCGTTGTGCCTAACTGTTATATATGTATGTAGTATTGTAAAGTAAACGGCTGCCTTGGCTTGGCTCAGTGTTGAGAATCGCACGTCGCCTGCAAGTAGTGTTAGTCAGCACACCGAGAAAGTCTCCATTGCACTCACACAGTCGCACGCTTTCATCTCATACACAATAAAAAAATTTAAAAAAAAAAACAATTATTCATCTATACAGCAATACACTCATTCACAAAACAACCATGTACACGCAATAACACACATCTGTACATCAACATCATTATTCTTAAGTCTGATACTAACTTGAACTAGTGTATACTGATAATTATATATCTATATATTCCCAACTGACTAAATAACTCTCTGCATTTATTGTATTATATTCTATCCCCTCTCCCCGCCCTCGCCTCGCCTCGCCTTGCCTCGCATCACCCATACACCCATGTATCCCAACTACTACAACAACCAATAAAACAACCAACCAACCAATCCATCGATAACTCAACTCCCAATCATCATCGACGTTGCCAACGACGACCCAATCGATTAACGATCGAATGATTGATCAATCAATCCACGAATTCAACAAAACAAAAAACCAAACCAAATTCAG
Seq C2 exon
GTCGTCGTTAATGCGCTGGTACAAGCTATACCGTCCATCTTCAATGTGCTATTGGTGTGTCTAATATTTTGGCTAATTTTTGCCATAATGGGTGTACAGCTTTTTGCTGGAAAATATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255:FBtr0074298:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0303597
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0074073, FBpp0110322, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292720, FBpp0309614
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCGCTTATCAACTTCGTTGCT
R:
GCAAAAAGCTGTACACCCATT
Band lengths:
230-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)