DmeEX6002882 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16475628-16481499:-
Coord C1 exon
chrX:16481326-16481499
Coord A exon
chrX:16480680-16480802
Coord C2 exon
chrX:16475628-16475750
Length
123 bp
Sequences
Splice sites
3' ss Seq
AATCTAAATCGCCCATCTAGCTG
3' ss Score
4.62
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCATTAGAAGATGTACATCTGCCACAAAGACCCATACTGCAGGATATTTTATACTATATGGACAGAATATTTACGGTTATATTCTTCTTGGAAATGTTAATCAAGTGGTTGGCGCTCGGCTTCAAAGTGTACTTCACCAACGCGTGGTGTTGGCTCGATTTCGTGATTGTCATG
Seq A exon
CTGTCGCTAATTAATTTGGCCGCGGTCTGGTCCGGGGCCGATGATGTGCCCGCCTTTCGCTCGATGCGAACTCTGCGCGCCCTGCGACCACTGCGGGCAGTTTCGCGCTGGGAGGGCATGAAA
Seq C2 exon
GTCGTCGTTAATGCGCTGGTACAAGCTATACCGTCCATCTTCAATGTGCTATTGGTGTGTCTAATATTTTGGCTAATTTTTGCCATAATGGGTGTACAGCTTTTTGCTGGAAAATATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-'34-40,'34-37,35-40=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(38.7=49.2)
A:
PF0052026=Ion_trans=FE(17.9=100)
C2:
PF0052026=Ion_trans=FE(17.9=100)
Main Inclusion Isoform:
FBpp0292718
Main Skipping Isoform:
FBpp0292721
Other Inclusion Isoforms:
FBpp0110321, FBpp0288560, FBpp0292697, FBpp0292698, FBpp0292709, FBpp0292719
Other Skipping Isoforms:
FBpp0074073, FBpp0110322, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292720, FBpp0292723, FBpp0303597, FBpp0309614, FBpp0311217
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAAAGACCCATACTGCA
R:
AGCTGTACACCCATTATGGCA
Band lengths:
255-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)