DreEX6067606 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4852185-4854360:+
Coord C1 exon
chr12:4852185-4852358
Coord A exon
chr12:4852458-4852580
Coord C2 exon
chr12:4854082-4854360
Length
123 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTATTTTATTTTAGGTG
3' ss Score
10.53
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCTTTTGAGGATATCAACATTGAGAGGCGCAGAGTGATCAAGACCATTCTGGAGTATGCTGATAAAGTCTTTACATATATTTTTATAGTGGAGATGTTACTGAAGTGGGTGGCATATGGCTTCAAGACCTACTTCACTAATGCATGGTGCTGGCTGGACTTCCTCATTGTGGAT
Seq A exon
GTGTCTCTGGTCAGTTTAACGGCTAATTTAATGGGCTACTCTGAGCTGGGGGCAATCAAATCTCTCAGGACACTTAGAGCTCTTCGTCCACTTCGAGCCCTATCCAGATTTGAAGGAATGAGG
Seq C2 exon
GTGGTAGTGAATGCACTTGTAGGTGCCATTCCCTCTATTTTTAACGTGCTCCTGGTGTGTCTGATATTCTGGCTCATCTTCAGCATTATGGGGGTCAATCTGTTTGCCGGAAAATTCTACCACTGCATCAACACCACCACAGAGGAACGGATCCCCATGGATGTAGTCAACAACAAGAGTGACTGCATGGCACTGATGTACACCAACGAGGTGCGATGGGTCAATGTCAAGGTCAACTACGACAACGTGGGACTCGGCTACCTCTCTCTGCTGCAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.1=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACTTCCTCATTGTGG
R:
ACCTTGACATTGACCCATCGC
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]