GgaEX6042490 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21102907-21117466:+
Coord C1 exon
chr7:21102907-21103080
Coord A exon
chr7:21104908-21105030
Coord C2 exon
chr7:21117185-21117466
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCTGTTTTCATATAGGTC
3' ss Score
11.21
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCTTTTGAAGATATATATATTGAACAGCGCAAAACTATCAAGACCATGCTGGAATATGCTGACAAAGTCTTCACTTACATCTTCATTCTGGAAATGCTGCTGAAGTGGGTGGCCTATGGCTATCAAACATACTTTACTAATGCCTGGTGCTGGCTGGACTTCCTGATTGTTGAT
Seq A exon
GTCTCTTTGGTTAGCTTAACAGCAAATGCATTGGGTTACTCTGAACTTGGTGCCATTAAGTCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCACGATTTGAAGGCATGAGG
Seq C2 exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'21-24,'21-21,22-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGGACTTCCTGATTG
R:
ACGTTTTTCCATCGGGCACTT
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]