MmuEX6101756 @ mm9
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66126931-66137854:-
Coord C1 exon
chr2:66137681-66137854
Coord A exon
chr2:66134810-66134932
Coord C2 exon
chr2:66126931-66127212
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTTGTATTGTACAGGTT
3' ss Score
8.5
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GCCTTTGAGGATATATATATTGATCAGCGAAAGACGATCAAAACCATGCTGGAGTATGCTGACAAAGTCTTCACTTACATTTTCATCCTGGAGATGCTCCTCAAATGGGTGGCCTATGGCTATCAAACATACTTCACCAATGCCTGGTGTTGGCTAGACTTCTTAATTGTTGAT
Seq A exon
GTTTCATTGGTCAGTTTAACAGCAAATGCCTTGGGTTACTCTGAACTCGGGGCCATCAAATCCCTAAGGACACTAAGAGCTCTGAGACCCCTAAGAGCCTTATCACGATTTGAAGGGATGAGG
Seq C2 exon
GTGGTTGTGAATGCCCTGTTAGGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTTGCCTTATATTCTGGCTAATTTTCAGCATCATGGGCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTGTTAACACCACAACTGGTGACATATTTGAGATCAGCGAAGTCAATAATCATTCTGATTGCCTAAAACTAATAGAAAGAAATGAGACCGCCCGGTGGAAAAATGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'25-27,'25-25,26-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.0=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTGTTGGCTAGACTTC
R:
CGGGCGGTCTCATTTCTTTCT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: