HsaEX6016411 @ hg19

Exon Skipping

Gene

ENSG00000144285 | SCN1A

Description

sodium channel, voltage-gated, type I, alpha subunit [Source:HGNC Symbol;Acc:10585]

Coordinates

chr2:166858982-166868792:-

Coord C1 exon

chr2:166868619-166868792

Coord A exon

chr2:166866229-166866351

Coord C2 exon

chr2:166858982-166859263

Length

123 bp

Sequences

Splice sites

3' ss Seq

TATTATTTTTGTGTGTGCAGGTT

3' ss Score

9.29

5' ss Seq

AGGGTAAGA

5' ss Score

9.21

Exon sequences

Seq C1 exon

GCATTTGAAGATATATATATTGATCAGCGAAAGACGATTAAGACGATGTTGGAATATGCTGACAAGGTTTTCACTTACATTTTCATTCTGGAAATGCTTCTAAAATGGGTGGCATATGGCTATCAAACATATTTCACCAATGCCTGGTGTTGGCTGGACTTCTTAATTGTTGAT

Seq A exon

GTTTCATTGGTCAGTTTAACAGCAAATGCCTTGGGTTACTCAGAACTTGGAGCCATCAAATCTCTCAGGACACTAAGAGCTCTGAGACCTCTAAGAGCCTTATCTCGATTTGAAGGGATGAGG

Seq C2 exon

GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTTGTCTTATATTCTGGCTAATTTTCAGCATCATGGGCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTATTAACACCACAACTGGTGACAGGTTTGACATCGAAGACGTGAATAATCATACTGATTGCCTAAAACTAATAGAAAGAAATGAGACTGCTCGATGGAAAAATGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTCTCTTTGCTTCAAGTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000144285-'22-23,'22-20,23-23=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features