MmuEX6090576 @ mm10
Exon Skipping
Gene
ENSMUSG00000001027 | Scn4a
Description
sodium channel, voltage-gated, type IV, alpha [Source:MGI Symbol;Acc:MGI:98250]
Coordinates
chr11:106324447-106326879:-
Coord C1 exon
chr11:106326706-106326879
Coord A exon
chr11:106326131-106326253
Coord C2 exon
chr11:106324447-106324725
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGAGCATGCACTTCTTCCAGGTC
3' ss Score
7.63
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCCTTCGAGGACATCTACATTGAACAGCGGCGAGTCATCCAAACCATCCTGGAATATGCTGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGCTGCTAAAGTGGGTGGCCTACGGCTTCAAGGTGTACTTCACCAACGCCTGGTGCTGGCTCGACTTCCTCATTGTGGAT
Seq A exon
GTCTCCATCATCAGTCTGGTGGCTAACTGGCTGGGCTACTCTGAGCTGGGGCCCATCAAATCCCTGCGCACGCTCCGGGCCCTGCGACCTCTGAGGGCACTGTCCCGATTTGAAGGCATGAGG
Seq C2 exon
GTGGTGGTGAACGCCCTTCTGGGAGCCATCCCTTCCATCATGAACGTGCTCCTTGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGGGTCAACTTGTTTGCTGGAAAGTTCTACTACTGCATCAACACAACCACCTCCGAGAGATTCGACATCTCTGTGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGTACACCGGCCAGGTCCGCTGGATGAACGTCAAGGTCAACTATGACAACGTGGGTCTCGGCTACCTCTCTCTTCTTCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001027-'21-23,'21-22,22-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.1=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTGAACAGCGGCGAGTC
R:
TGACCCCCATGATGCTGAAGA
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types