GgaEX6027197 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1635004-1636292:-
Coord C1 exon
chr27:1636119-1636292
Coord A exon
chr27:1635483-1635605
Coord C2 exon
chr27:1635004-1635282
Length
123 bp
Sequences
Splice sites
3' ss Seq
CCTCGGGCTGCTCCTTCCAGGTC
3' ss Score
8.57
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCTTTTGAGGACATCTACATAGAGCAGCGGAAGGTGATCCGCACCATCCTGGAGTATGCTGATAAGGTCTTCTCCTACATCTTCGTCATTGAGATGCTGCTCAAGTGGGTGGCCTATGGCTTCAAGGTGTACTTCACCAACGCGTGGTGCTGGCTGGACTTCCTCATCGTCGAT
Seq A exon
GTCTCCCTCATCAGCCTGACAGCCAACTGGTTGGGATACTCCGAGCTGGGAGCCATCAAATCCCTGCGGACACTGAGAGCACTGAGACCTCTGCGTGCCCTGTCCAGATTTGAAGGCATGAGG
Seq C2 exon
GTGGTGGTAAATGCCTTGTTGGGTGCCATCCCCTCCATCATGAACGTCCTGCTGGTCTGCCTCATCTTCTGGCTGATATTCAGCATCATGGGGGTGAACCTCTTCGCAGGGAAGTACTACCGATGCGTCAACACCACCACGGGGGACCTCTTTGACATCAGCGTGGTGAACAATAAGAGCGACTGCATGGCTCTCCTCCACACCAACGAGGTCAGATGGGTCAACGTCAAAGTCAACTTCGACAACGTGGGCTTGGGATACCTGTCCTTGCTGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.1=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGCTCAAGTGGGTG
R:
CGCTGATGTCAAAGAGGTCCC
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]