BtaEX6089650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48798842-48800949:-
Coord C1 exon
chr19:48800776-48800949
Coord A exon
chr19:48800552-48800674
Coord C2 exon
chr19:48798842-48799120
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCTGCCCTCCCGTTTGCAGGTC
3' ss Score
13.13
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GCCTTCGAGGACATCCACATTGAGCAGCGGCGAGTCATCCGCACCATCCTGGAGTACGCCGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGCTACTCAAGTGGGTGGCCTACGGCTTCAAGGTGTACTTCACCAATGCCTGGTGCTGGCTCGACTTCCTCATCGTGGAC
Seq A exon
GTCTCCATCATCAGCCTGGTGGCCAACTGGCTGGGCTACTCGGAGCTGGGACCCATCAAATCCCTGCGGACGCTGCGGGCCCTGCGCCCCCTGAGGGCACTGTCTCGATTCGAGGGCATGAGG
Seq C2 exon
GTGGTGGTGAATGCCCTCCTGGGAGCCATCCCCTCCATCATGAACGTGCTGCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGTGTCAACCTGTTTGCCGGCAAGTTCTACTACTGCATCAACACCACCACCTCCGAGAGATTCGACATCACCGAGGTCAACAACAAGTCCGAGTGCGAGAGCCTGATGCACACGGGCCAGGTCCGCTGGCTCAACGTCAAGGTCAACTACGACAACGTGGGCCTCGGCTACCTCTCGCTCTTGCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.1=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGGCTTCAAGGTGTAC
R:
CTCGCACTCGGACTTGTTGTT
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]