RnoEX0078574 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94511725-94514230:-
Coord C1 exon
chr10:94514057-94514230
Coord A exon
chr10:94513494-94513616
Coord C2 exon
chr10:94511725-94512003
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGAACGCACACTTCTTCCAGGTC
3' ss Score
7.77
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCCTTCGAAGACATCTACATTGAACAGCGACGAGTCATCCGCACCATCCTGGAATACGCCGACAAGGTCTTCACCTACATCTTCATCCTGGAGATGTTGCTAAAGTGGGTCGCCTACGGCTTCAAGGTGTATTTCACCAATGCCTGGTGCTGGCTCGACTTCCTCATCGTGGAC
Seq A exon
GTCTCCATCATCAGCCTGGTGGCAAACTGGCTGGGCTACTCTGAGCTGGGGCCCATCAAATCCCTGCGCACACTCCGGGCCCTGCGACCTCTGAGGGCACTGTCTCGATTTGAGGGTATGAGG
Seq C2 exon
GTGGTGGTGAACGCCCTCCTGGGAGCTATCCCCTCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGGGTCAACTTGTTTGCTGGAAAGTTCTACTACTGCGTCAACACCACCACCTCTGAGAGATTCGACATCTCGGTGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGTATACAGGCCAGGTCCGCTGGATGAATGTCAAGGTCAACTACGACAACGTGGGTCTGGGCTATCTCTCCCTCCTTCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'25-23,'25-22,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(17.1=67.2)
A:
PF0052026=Ion_trans=FE(17.5=100)
C2:
PF0052026=Ion_trans=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAGCGACGAGTCATCC
R:
ACAAGTTGACCCCCATGATGC
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]