DreALTA0000529-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3645472-3646185:+
Coord C1 exon
chr21:3645472-3645511
Coord A exon
chr21:3646066-3646067
Coord C2 exon
chr21:3646068-3646185
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTGTATTTCTTTCACCTAGAGA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GGCGAAGAGAGAAAAAACTGGAAGAAATGGAAAGAACAAA
Seq A exon
AG
Seq C2 exon
AAAGAAGAGAAGCGGCGACGAAAAGAGACCAAACTCATCCAGCAGCTGGAGAAACAGAAGCTGAAGAAAGAGGAGGAAAATCAACAGCAGGTTAAACAGGAAGAGAAGGAAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707-3-7,3-6,3-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.772
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGGAAGAAATGGAAAGAACA
R:
CTTCAGCTTCTGTTTCTCCAGCT
Band lengths:
92-94
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]