RnoALTA0038394-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8750267-8750638:-
Coord C1 exon
chr3:8750593-8750638
Coord A exon
chr3:8750394-8750395
Coord C2 exon
chr3:8750267-8750393
Length
2 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCCCACCAATTCTTCTCCAGAGA
3' ss Score
7.67
Exon sequences
Seq C1 exon
GGTGAACACGGCCAAAGGGTTGAATGGCGAAAATGGAAGCAGCAGA
Seq A exon
AG
Seq C2 exon
AAAGAGGAGAAAAAAAAGTGGAAGGACCTCAAGATAATGAAAAAACTGGAGCGGCAGCGTGCCCAAGAGAAACAGGCTAAGCGCCAAGAGGAGGAGGAAGAGGCGGCTGCCCAGAGGAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGAAAATGGAAGCAGCA
R:
TAGCCTGTTTCTCTTGGGCAC
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]