MmuALTA1031252-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039660 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30177593-30177965:-
Coord C1 exon
chr2:30177920-30177965
Coord A exon
chr2:30177711-30177721
Coord C2 exon
chr2:30177593-30177710
Length
11 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TCCCTCCAATAATTCTCCAGAAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
GGTGAACATGGCCAAAGGGTTGAATGGCGAAAATGGAAACAGCAGA
Seq A exon
AAAAAGAGGAG
Seq C2 exon
AAAAAGAAGTGGAAGGACCTCAAGATAATGAAGAAACTGGAGCGGCAGCGTGCCCAAGAGGAAGAGGCTAAACGCCAGGAAGAGGAGGAAGAGGCGGCGGCCCAGAGGAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-3-4,3-3,3-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACATGGCCAAAGGGTT
R:
CTGCCGCTCCAGTTTCTTCAT
Band lengths:
94-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types