DreALTA0001315-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4637907-4638247:-
Coord C1 exon
chr4:4638173-4638247
Coord A exon
NA
Coord C2 exon
chr4:4637907-4638002
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TAATGAAGTGACTTGTGCAGGAA
3' ss Score
2.06
Exon sequences
Seq C1 exon
AGCTCATTTAAAAACTCCACTCGGAGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGCACGGAT
Seq A exon
NA
Seq C2 exon
GAATCTAAATGGCGTCCATTCATGCTGAAGCCGCTGCCGTCACCGCTGATGAAACCAGTGCTGGTGTTCGTCAACCCGAAAAGTGGAGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-11-13,11-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078119=DAGK_cat=PU(10.4=40.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCATTTAAAAACTCCACTCGGA
R:
GGTTTCCTCCACTTTTCGGGT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]