DreALTA0001406-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1349614-1349923:-
Coord C1 exon
chr19:1349821-1349923
Coord A exon
chr19:1349707-1349712
Coord C2 exon
chr19:1349614-1349706
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGCG
3' ss Score
9.36
Exon sequences
Seq C1 exon
AAACGAAACTCATCAGAGAGAGAAGAAAACACATGGAAGCGGCAGGGGAAGGGGAAAGCCAGAGACAGAGCCGCAGCTGGAGGAGAACAGGACACTGAGAAAG
Seq A exon
GCGCAG
Seq C2 exon
AGTCGGCATCAGTCGCAGTGGGCAGCACAGACTACACTGAGGTTCCTCTGGACTCTCTGGATATTTCAGCAGCAGACAGTCTCTCACACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAAAGCCAGAGACAGAG
R:
CTCAGTGTAGTCTGTGCTGCC
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]