MmuALTA0006159-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:34905342-34905711:+
Coord C1 exon
chr17:34905342-34905456
Coord A exon
chr17:34905610-34905633
Coord C2 exon
chr17:34905634-34905711
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTCTCTGTCTCTGTGTCAGGAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGCGGTTCTAGTGGCCGGCGCAAGGCCAAGAAGAAATGGCGGAAAGACAGCCCGTGGGTGAAGCCATCTAGAAAACGGCGGAAACGAGAGCCTCCGAGGGCCAAGGAGCCAAGAG
Seq A exon
GAGTGAATGGTGTGGGTTCCTCAG
Seq C2 exon
GGCCCAGTGAGTACATGGAGGTTCCTCTGGGGTCCCTGGAGCTGCCCAGCGAGGGGACCCTCTCCCCCAACCACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-25-24,25-23,25-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(18.8=100)
A:
NA
C2:
PF0334410=Daxx=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGCCAAGAAGAAATGG
R:
CCTCCATGTACTCACTGGGCC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types