RnoALTA0013384-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4583857-4584223:+
Coord C1 exon
chr20:4583857-4583971
Coord A exon
chr20:4584122-4584145
Coord C2 exon
chr20:4584146-4584223
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTCTCTGTCTCTGTGTCAGGAG
3' ss Score
8.74
Exon sequences
Seq C1 exon
AGTGGCTCTAGCGGCCGACGCAAGGCCAAGAAGAAATGGCGGAAAGACAGCCCATGGGTGAAGCCATCCAGGAAACGGCGGAAGCGAGAGCCTCCGAGGGCCAAGGAGCCCAGAG
Seq A exon
GAGTGAATGGTGTGGGTTCCTCAG
Seq C2 exon
GGCCCAGTGAGTACATGGAGGTTCCTCTGGGGTCCCTGGAGCTGCCCAGCGAGGGGACCCTCTCCCCCAACCACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630-19-20,19-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(18.8=100)
A:
NA
C2:
PF0334410=Daxx=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGGCCAAGAAGAAATGG
R:
CCTCCATGTACTCACTGGGCC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]