DreALTA0003490-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19384917-19390449:-
Coord C1 exon
chr7:19390289-19390449
Coord A exon
chr7:19386352-19386511
Coord C2 exon
chr7:19384917-19386351
Length
160 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TTGCTGTTTTTCTTCTTCAGTGA
3' ss Score
10
Exon sequences
Seq C1 exon
CGGCGTGTTGGGTTTGATTGGTTTTCCTGACTACGTCTCTGTTTATGCTCGTGAATCATTTGATCACGCCTGTGAGACGCAGGCCGACCGTCCCCAGAAATCGGAGCGTTTTCCTCATCGCATGAACTTCCACCGTAAGATTTTACATAATAAAGTACTAG
Seq A exon
TGAAGACATGGAAACCTGTTTAAATCCCTTGAAGCTGGAGATTTGAGAGTATATGACAGAAGGGGAAAATGGGCGCAGCCGTTTTACAGTTTTTGTATGAGGACCTGACGACGGCAAGCCAGTAATCCATTTTGTGTGTTTTTCCCCCTAATTTTTCCAG
Seq C2 exon
CTTTTCGTTGTTCTTGGAAAGTTGCGTGCACCCTGTTCCAAATTCCGTGAGACATTTTGGGAATCTGCCCATCTTAAGCCCTGTCTCCCTGCAGTTGGCACAGATAAAGACTCAGTTGGCACTGCACCAGCTGAATGCAATTGTTGGCACAAGTGTCACTCCGGCTGCAGTTCCTACAGCTGCTTTGACCTTGCTCAACTTGCTTAAGGTCACTATGTCGCATCCATTATACAATCCTCGTGGAGGACCTTTCCCCAGCGGTCAAAGACCCATCGTGCCCAGCCAATATGGTCTTGTGTCACAGCCTCGAATGGAGATGGGTGCAGCCCGTCTTGGCCCAGGTACCATGTCTGGTTCTCGTGCAGGATTGTTGGGCAGCTCGCCCTTCTCAATGGGACAAGGTCAGTCGCAGATTTCAACAGAAATCGAAGCTGCCATTGACCGTAACCTTCGGGGAGCCCGTGAGGAAGTGCGCATTATTTCGCAAATGCTCCAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.828
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGCATGAACTTCCACCG
R:
TTGAGCAAGGTCAAAGCAGCT
Band lengths:
245-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]