DreEX0009688 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19384124-19390817:-
Coord C1 exon
chr7:19390316-19390817
Coord A exon
chr7:19384917-19386351
Coord C2 exon
chr7:19384124-19384185
Length
1435 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCCTAATTTTTCCAGCTT
3' ss Score
7.84
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGAGCTACTACTGTTTGAGAAACATACTGTTTAAGAGTAACATTAAATGCACCAAACAGCACATTATGATTTCATTACAAAAATATCACTTTACTGAAATAAATAGGAAGCTAAAAATTTGTACACCTACATTTTCGTTCCGTTTTAACAAGTCTTTGCCTGAAGCCAGCCTAAAAAAGGAAAACGCTGCCATCTTCTGGATATCATTGAAAGAGAAACTACTCTTCTGTTGTTTTTCCGAAAATAAAAGCCTTTATATCAGTATACCTTTTCAAATTGTCACAAATGTTCGCACTTTCTGCTCAACTAATTAGCCGTCAAATTATGTAAATTCTGAATGTTTGAAAATGTTTCGTCGCAGGCGGTCGGCGTGTTGGGTTTGATTGGTTTTCCTGACTACGTCTCTGTTTATGCTCGTGAATCATTTGATCACGCCTGTGAGACGCAGGCCGACCGTCCCCAGAAATCGGAGCGTTTTCCTCATCGCATGAACTTCCACC
Seq A exon
CTTTTCGTTGTTCTTGGAAAGTTGCGTGCACCCTGTTCCAAATTCCGTGAGACATTTTGGGAATCTGCCCATCTTAAGCCCTGTCTCCCTGCAGTTGGCACAGATAAAGACTCAGTTGGCACTGCACCAGCTGAATGCAATTGTTGGCACAAGTGTCACTCCGGCTGCAGTTCCTACAGCTGCTTTGACCTTGCTCAACTTGCTTAAGGTCACTATGTCGCATCCATTATACAATCCTCGTGGAGGACCTTTCCCCAGCGGTCAAAGACCCATCGTGCCCAGCCAATATGGTCTTGTGTCACAGCCTCGAATGGAGATGGGTGCAGCCCGTCTTGGCCCAGGTACCATGTCTGGTTCTCGTGCAGGATTGTTGGGCAGCTCGCCCTTCTCAATGGGACAAGGTCAGTCGCAGATTTCAACAGAAATCGAAGCTGCCATTGACCGTAACCTTCGGGGAGCCCGTGAGGAAGTGCGCATTATTTCGCAAATGCTCCAGCAACCCAAAAAAGCAGATCCTCGTCTGAGAAACGATTCCATGGATGAAGTGCTTTCCTCCAGGGGCAGCGGGTTTTCAGGGTCTTCGAGATCAGATGAGGTGGACTGGTCCATGTACCAAGCCCCAAGCAAGCTCTTTTCATCAAGCATGGAGCGCCCTTCCAGTTCCTCACCGGTGTTCAAGTCTGCAGGTTTTGGTGGAGGACCAAGTGGTTTGAGCAGCCAACGTCCGCCGGAACAGCGACCAAATCGCTACACTTCGGAAAGTGCCACCAGCATCCTAGCAAGCTTTGGACTTTCTAATGAAGACCTAGAACTTCTAAGCCACTACCCAGATGATCAGCTGACTCCTGACAACCTACCGTTTATTTTACGGGACATTCGTATGCGTAAGGTGAAGAGGGATGTTGATGAGAGACCAGACTACAATAAAGTCATTGACTATGGACATTCTAGAAAATTTGACTATCCTGAGGAGAGCTCAGAAAGTTACGCGACTGAACACCTTCCTAAAGAGACTCCAAAGTATGCTAGTAAGGTCTCCAGACCAGCCTTCACTGCTAGTAACATCACAAAGCAACCTCAGATGTGCCAATCAGGTCCAGGCCCCATACATGTTTCAGAGCTTCATAAACCTTCACCAGTTGATCCGAGACCCACTAAGACGATCCCAGCGAGACCACCTGCTTCCCAGCCTGCTCTGACACCTTCCAGTCGACCTCCTCTCCAGGTACCATCTCAGCTTGGTGTTCTTCCTATGATGTCTGTTGATGACATGCCTGGAGGTCCCAACTGGATCCCGTTCCTGTCGCCACCAGTCAGCATGCCCCCAATGAAGAGGCTACCGACTCCAACCATGATGAATGATTACTCTGCAGCTACTCCAAGAATCTTTCCTCATACATGCTCTCTATGTAACATTGAATGTGTCCAGATTAAG
Seq C2 exon
GATTGGCTCGAACATCAGAACACAAATGTTCACATTGAGAACTGTAGGCGTCTTAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.828 C2=0.429
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAACGCTGCCATCTTCT
R:
TGTGTTCTGATGTTCGAGCCA
Band lengths:
347-1782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]