HsaEX0074096 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71503691-71582910:+
Coord C1 exon
chr2:71503691-71503884
Coord A exon
chr2:71575883-71577401
Coord C2 exon
chr2:71582849-71582910
Length
1519 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTTAACTTTCAGCTT
3' ss Score
10.03
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGTCCTGCGCCTTGAGGCTCAAGCGGCGGCGTGCAAGGCGTGTGAGGCGCGTAGAGAGCCGCGCGCGCCGTCTGCGATGCCCCGGGACGGCGTTCCTGCCGGGAATACCACCCCGGCGGCAGCCCAGGCTGCCGCGCAGAGCCCGGATTCCGCGACTGCCGGGGCACCGCAGGTTTTGGACTCGCTGAAGCG
Seq A exon
CTTTGTGTTATTCTTGGAAAATTTCGCACCACTTGTGAATTCCTTGAACCTGGGCATTGCAAACCCACTTCTGTTGGGCCCATCTCCTTTGCACTTTGCTCAGATTAAGACTCAGTTGGCGCTTCAGCAGCTGAATGCCGTTGCCTCACATGGTTCAACACCACCTTATACTTTATTAAATCAGGCTTTCTTGAAAATAGCCATGTCGAGACCCAGGTTTAATCCTCGAGGAGACTTTCCACTTCAAAGGCCACGAGCACCTAACCCTTCTGGGATGAGGCCTCCAGGACCATTTATGAGGCCTGGATCTATGGGTCTCCCAAGATTTTACCCAGCAGGGAGAGCACGTGGAATTCCACACAGATTTGCTGGCCATGAATCTTATCAGAACATGGGGCCACAGAGAATGAATGTTCAGGTAACTCAACACAGAACTGATCCAAGATTGACCAAAGAAAAACTGGATTTTCATGAAGCACAACAGAAGAAGGGGAAGCCTCATGGTAGCCGGTGGGATGATGAGCCTCATATATCTGCATCAGTGGCAGTGAAACAGAGTTCTGTAACACAGGTTACAGAGCAGAGTCCCAAAGTACAGAGCCGCTATACAAAAGAGAGTGCCTCAAGTATCTTAGCAAGTTTTGGATTATCTAATGAAGACCTAGAAGAACTTAGTCGCTATCCTGATGAACAACTAACTCCTGAAAATATGCCATTAATTTTGAGGGATATAAGAATGCGAAAAATGGGGCGCCGATTACCTAATTTACCTTCTCAGAGCAGAAATAAAGAAACACTTGGTAGTGAAGCAGTTTCAAGTAATGTGATCGATTATGGGCATGCAAGCAAATATGGCTACACAGAAGATCCACTTGAAGTACGTATTTATGATCCTGAAATTCCAACTGATGAGGTCGAGAATGAATTTCAGTCACAGCAGAACATTTCTGCATCTGTTCCCAATCCAAATGTGATATGTAATTCTATGTTTCCTGTTGAAGACGTATTTCGCCAAATGGACTTCCCCGGTGAGTCCTCCAATAATCGGTCCTTTTTCTCAGTTGAGAGTGGAACCAAGATGTCAGGCTTACACATTTCAGGAGGACAGTCAGTCCTTGAACCCATAAAATCCGTCAACCAATCCATTAACCAAACAGTTAGCCAGACAATGAGTCAATCTCTGATTCCTCCATCTATGAACCAGCAACCTTTTTCGTCGGAATTAATTTCATCTGTAAGCCAGCAAGAGCGGATCCCACATGAACCTGTGATTAATTCATCTAACGTACATGTTGGATCAAGAGGAAGTAAAAAGAATTACCAGTCACAGGCTGACATTCCCATTCGGTCTCCCTTTGGTATTGTGAAAGCATCCTGGCTACCAAAGTTTTCACATGCTGATGCCCAGAAGATGAAGAGACTTCCAACTCCTTCTATGATGAATGATTATTATGCAGCATCTCCAAGAATATTTCCACATTTGTGTTCTCTGTGTAACGTAGAATGTAGTCATTTGAAG
Seq C2 exon
GATTGGATTCAGCATCAAAATACATCTACTCATATTGAGAGCTGTCGACAGTTACGTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.702 C2=0.416
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCTGCGCCTTGAGG
R:
TGTTGACGTAACTGTCGACA
Band lengths:
256-1775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)