MmuEX1028580 @ mm10
Exon Skipping
Gene
ENSMUSG00000030016 | Zfp638
Description
zinc finger protein 638 [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83867109-83935010:+
Coord C1 exon
chr6:83867109-83867242
Coord A exon
chr6:83929873-83930165
Coord C2 exon
chr6:83934949-83935010
Length
293 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTACATTTGAATTAGATG
3' ss Score
5.89
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGAAGCGAATTGAGGTGAGGGAGGAGCTCAGAGCTGTGCAGGTCGGCGATGCCCGGGGCTGGCGTTCCCGCAGCGGCATCGAGCCCCAAGTCCGGGGCCTCCGGGTCGTCGCAGGTGTCGGACTCCCTGAGGCG
Seq A exon
ATGCAGTTTTACGCCAACAAGAGCGGATCTCACAGAAGTCTGTGATCAGTTCAGCTGATGCACATGGTGGACCTACAGAAAGTAAAAAGGATTACCAATCAGAGGCTGACTTGCCTATTCGGTCTCCCTTTGGGATTGTGAAAGCTTCGTGGCTACCAAAGTTTACACAAGCTGGTGCCCAGAAAATGAAGAGACTGCCAACCCCTTCTATGATGAATGATTATTATGCAGCATCTCCAAGAATATTTCCACATTTGTGTTCTCTGTGTAACGTAGAATGTAGTCATTTGAAG
Seq C2 exon
GACTGGATTCAGCATCAAAATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.673 C2=0.451
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000203273fB19961
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCGAATTGAGGTGAGGG
R:
TGTTGCCTTAACTGCCGACA
Band lengths:
196-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types