MmuEX6005217 @ mm9
Exon Skipping
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83864347-83885004:+
Coord C1 exon
chr6:83864347-83864473
Coord A exon
chr6:83878647-83880159
Coord C2 exon
chr6:83884943-83885004
Length
1513 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTTAACTTTCAGCTT
3' ss Score
10.03
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGGACGAGGGCTTTAGGCGAAGATGCGCATGCGTGTAGTCCCATGGAGGCGGTAGCTGCTTCATCGCGGTGACTGGAGGCCGAGTGCTAAACTGTGTGGGGCACGGATGGGATCCAGCTGTTAGTCG
Seq A exon
CTTTGTGTTATTCTTGGAAAATTTCGCACCACTTGTGAATTCCTTGAGCCTGGGCATTGCGAGCCCACTTCTGTTGGGCCCGTCTCCTTTGCGCTTTGCTCAGATTGAGACTCAGTTGGCGCTTCAGCAGCTGAATGCCGTTGCCTCCCATGGTTCAACACCACCTTATACTTTTTTAAATCAGGCATTCTTGAAAGTAGCCATGTCGAGACCCAGGTTTAATCCTCGAGGGACCTTTCCACTTCAAAGGCCACGAGCACCTAATCCTCCTGGGATGAGGCCTCCAGGACCATTTGTGAGGCCTGGCTCTATGGGTCTTCCAAGATTTTACCCAGCAGGGAGAGCCCGTGGAATTCCACACAGATTTCCTGGCCACGGATCTTATCAGAACATGGGACCACAAAGAATGAATGTTCAGGTAACTCAACACCGAACCGATCCAAGATTAACCAAAGAAAAATTGGATTTTCCTGAAGCACAACAAAAGAAGGGGAAGCCTCATGGTAGTCGGTGGGATGATGAGTCTCATATAACTCCACCGGTAGAAGTGAAACAGAGCTCTGTAACCCAGGTTACAGAGCAAAGTCCTAAAGTACAGAGCCGCTACACAAAAGAGAGTGCTTCAAGTATTTTAGCAAGTTTTGGATTATCAAATGAAGATCTAGAAGAACTTAGCCGCTATCCTGATGAACAGCTAACTCCTGAAAATATGCCATTAATATTGAGGGATATAAGAATGCGAAAAATGAGCCGCCGATTACCTAATTTACCTTCTCACAGCAGAAATAAGGAAACACTTAGTAATGAAACAGTTTCAAGTAATGTGATTGATTATGGGCATGCAAGCAAATATGGTTATACAGAAGATCCACTTGAAGTACGTATTTATGATCCTGAAATTCCAACTGATGAAGTAAAGAATGAATTTCAGCCCCAGCAGAGCATTTCTGCAACTGTTTCAACTCCAAATGTGATATGTAATTCTGTGTTTCCTGGTGGAGATATGTTTCGTCAGATGGACTTCCCTGGTGAGTCCTCCAGTCAGTCTTTTTTCCCAGTTGAGAGTGGAACCAAGATGTCAGGCTTACACATTTCAGGACAGTCAGTCCTTGAACCTGTAAAATCCATCAGCCAGTCTATTAGCCAAACAGTTAGCCAGACAACGAGCCAGTCTCTGAATCCTCCATCTATGAACCAGGTACCCTTTACATTTGAATTAGATGCAGTTTTACGCCAACAAGAGCGGATCTCACAGAAGTCTGTGATCAGTTCAGCTGATGCACATGGTGGACCTACAGAAAGTAAAAAGGATTACCAATCAGAGGCTGACTTGCCTATTCGGTCTCCCTTTGGGATTGTGAAAGCTTCGTGGCTACCAAAGTTTACACAAGCTGGTGCCCAGAAAATGAAGAGACTGCCAACCCCTTCTATGATGAATGATTATTATGCAGCATCTCCAAGAATATTTCCACATTTGTGTTCTCTGTGTAACGTAGAATGTAGTCATTTGAAG
Seq C2 exon
GACTGGATTCAGCATCAAAATACCTCCACCCACATTGAGAGCTGTCGGCAGTTAAGGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.677 C2=0.429
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGCTTTAGGCGAAGATG
R:
TGTTGCCTTAACTGCCGACA
Band lengths:
185-1698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: